├── .gitignore ├── .npmignore ├── CNAME ├── LICENSE ├── README.md ├── context.js ├── index.html ├── index.js ├── lib ├── context.js ├── fonts │ ├── Open-Sans-300 │ │ ├── Open-Sans-300.eot │ │ ├── Open-Sans-300.svg │ │ ├── Open-Sans-300.ttf │ │ ├── Open-Sans-300.woff │ │ └── Open-Sans-300.woff2 │ ├── Open-Sans-300italic │ │ ├── Open-Sans-300italic.eot │ │ ├── Open-Sans-300italic.svg │ │ ├── Open-Sans-300italic.ttf │ │ ├── Open-Sans-300italic.woff │ │ └── Open-Sans-300italic.woff2 │ ├── Open-Sans-600 │ │ ├── Open-Sans-600.eot │ │ ├── Open-Sans-600.svg │ │ ├── Open-Sans-600.ttf │ │ ├── Open-Sans-600.woff │ │ └── Open-Sans-600.woff2 │ └── Open-Sans-600italic │ │ ├── Open-Sans-600italic.eot │ │ ├── Open-Sans-600italic.svg │ │ ├── Open-Sans-600italic.ttf │ │ ├── Open-Sans-600italic.woff │ │ └── Open-Sans-600italic.woff2 ├── index.css ├── index.js └── template.html ├── logo.svg ├── ontology.js ├── package-lock.json ├── package.json ├── prefixes.js └── test └── test.js /.gitignore: -------------------------------------------------------------------------------- 1 | scholarly-article-browser.js 2 | ontology-browser.js 3 | node_modules 4 | npm-debug.log 5 | -------------------------------------------------------------------------------- /.npmignore: -------------------------------------------------------------------------------- 1 | .git 2 | test/ 3 | .gitignore 4 | -------------------------------------------------------------------------------- /CNAME: -------------------------------------------------------------------------------- 1 | ns.sci.pe 2 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | Apache License 2 | Version 2.0, January 2004 3 | http://www.apache.org/licenses/ 4 | 5 | TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 6 | 7 | 1. Definitions. 8 | 9 | "License" shall mean the terms and conditions for use, reproduction, 10 | and distribution as defined by Sections 1 through 9 of this document. 11 | 12 | "Licensor" shall mean the copyright owner or entity authorized by 13 | the copyright owner that is granting the License. 14 | 15 | "Legal Entity" shall mean the union of the acting entity and all 16 | other entities that control, are controlled by, or are under common 17 | control with that entity. For the purposes of this definition, 18 | "control" means (i) the power, direct or indirect, to cause the 19 | direction or management of such entity, whether by contract or 20 | otherwise, or (ii) ownership of fifty percent (50%) or more of the 21 | outstanding shares, or (iii) beneficial ownership of such entity. 22 | 23 | "You" (or "Your") shall mean an individual or Legal Entity 24 | exercising permissions granted by this License. 25 | 26 | "Source" form shall mean the preferred form for making modifications, 27 | including but not limited to software source code, documentation 28 | source, and configuration files. 29 | 30 | "Object" form shall mean any form resulting from mechanical 31 | transformation or translation of a Source form, including but 32 | not limited to compiled object code, generated documentation, 33 | and conversions to other media types. 34 | 35 | "Work" shall mean the work of authorship, whether in Source or 36 | Object form, made available under the License, as indicated by a 37 | copyright notice that is included in or attached to the work 38 | (an example is provided in the Appendix below). 39 | 40 | "Derivative Works" shall mean any work, whether in Source or Object 41 | form, that is based on (or derived from) the Work and for which the 42 | editorial revisions, annotations, elaborations, or other modifications 43 | represent, as a whole, an original work of authorship. For the purposes 44 | of this License, Derivative Works shall not include works that remain 45 | separable from, or merely link (or bind by name) to the interfaces of, 46 | the Work and Derivative Works thereof. 47 | 48 | "Contribution" shall mean any work of authorship, including 49 | the original version of the Work and any modifications or additions 50 | to that Work or Derivative Works thereof, that is intentionally 51 | submitted to Licensor for inclusion in the Work by the copyright owner 52 | or by an individual or Legal Entity authorized to submit on behalf of 53 | the copyright owner. For the purposes of this definition, "submitted" 54 | means any form of electronic, verbal, or written communication sent 55 | to the Licensor or its representatives, including but not limited to 56 | communication on electronic mailing lists, source code control systems, 57 | and issue tracking systems that are managed by, or on behalf of, the 58 | Licensor for the purpose of discussing and improving the Work, but 59 | excluding communication that is conspicuously marked or otherwise 60 | designated in writing by the copyright owner as "Not a Contribution." 61 | 62 | "Contributor" shall mean Licensor and any individual or Legal Entity 63 | on behalf of whom a Contribution has been received by Licensor and 64 | subsequently incorporated within the Work. 65 | 66 | 2. Grant of Copyright License. Subject to the terms and conditions of 67 | this License, each Contributor hereby grants to You a perpetual, 68 | worldwide, non-exclusive, no-charge, royalty-free, irrevocable 69 | copyright license to reproduce, prepare Derivative Works of, 70 | publicly display, publicly perform, sublicense, and distribute the 71 | Work and such Derivative Works in Source or Object form. 72 | 73 | 3. Grant of Patent License. Subject to the terms and conditions of 74 | this License, each Contributor hereby grants to You a perpetual, 75 | worldwide, non-exclusive, no-charge, royalty-free, irrevocable 76 | (except as stated in this section) patent license to make, have made, 77 | use, offer to sell, sell, import, and otherwise transfer the Work, 78 | where such license applies only to those patent claims licensable 79 | by such Contributor that are necessarily infringed by their 80 | Contribution(s) alone or by combination of their Contribution(s) 81 | with the Work to which such Contribution(s) was submitted. If You 82 | institute patent litigation against any entity (including a 83 | cross-claim or counterclaim in a lawsuit) alleging that the Work 84 | or a Contribution incorporated within the Work constitutes direct 85 | or contributory patent infringement, then any patent licenses 86 | granted to You under this License for that Work shall terminate 87 | as of the date such litigation is filed. 88 | 89 | 4. Redistribution. You may reproduce and distribute copies of the 90 | Work or Derivative Works thereof in any medium, with or without 91 | modifications, and in Source or Object form, provided that You 92 | meet the following conditions: 93 | 94 | (a) You must give any other recipients of the Work or 95 | Derivative Works a copy of this License; and 96 | 97 | (b) You must cause any modified files to carry prominent notices 98 | stating that You changed the files; and 99 | 100 | (c) You must retain, in the Source form of any Derivative Works 101 | that You distribute, all copyright, patent, trademark, and 102 | attribution notices from the Source form of the Work, 103 | excluding those notices that do not pertain to any part of 104 | the Derivative Works; and 105 | 106 | (d) If the Work includes a "NOTICE" text file as part of its 107 | distribution, then any Derivative Works that You distribute must 108 | include a readable copy of the attribution notices contained 109 | within such NOTICE file, excluding those notices that do not 110 | pertain to any part of the Derivative Works, in at least one 111 | of the following places: within a NOTICE text file distributed 112 | as part of the Derivative Works; within the Source form or 113 | documentation, if provided along with the Derivative Works; or, 114 | within a display generated by the Derivative Works, if and 115 | wherever such third-party notices normally appear. The contents 116 | of the NOTICE file are for informational purposes only and 117 | do not modify the License. You may add Your own attribution 118 | notices within Derivative Works that You distribute, alongside 119 | or as an addendum to the NOTICE text from the Work, provided 120 | that such additional attribution notices cannot be construed 121 | as modifying the License. 122 | 123 | You may add Your own copyright statement to Your modifications and 124 | may provide additional or different license terms and conditions 125 | for use, reproduction, or distribution of Your modifications, or 126 | for any such Derivative Works as a whole, provided Your use, 127 | reproduction, and distribution of the Work otherwise complies with 128 | the conditions stated in this License. 129 | 130 | 5. Submission of Contributions. Unless You explicitly state otherwise, 131 | any Contribution intentionally submitted for inclusion in the Work 132 | by You to the Licensor shall be under the terms and conditions of 133 | this License, without any additional terms or conditions. 134 | Notwithstanding the above, nothing herein shall supersede or modify 135 | the terms of any separate license agreement you may have executed 136 | with Licensor regarding such Contributions. 137 | 138 | 6. Trademarks. This License does not grant permission to use the trade 139 | names, trademarks, service marks, or product names of the Licensor, 140 | except as required for reasonable and customary use in describing the 141 | origin of the Work and reproducing the content of the NOTICE file. 142 | 143 | 7. Disclaimer of Warranty. Unless required by applicable law or 144 | agreed to in writing, Licensor provides the Work (and each 145 | Contributor provides its Contributions) on an "AS IS" BASIS, 146 | WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or 147 | implied, including, without limitation, any warranties or conditions 148 | of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A 149 | PARTICULAR PURPOSE. You are solely responsible for determining the 150 | appropriateness of using or redistributing the Work and assume any 151 | risks associated with Your exercise of permissions under this License. 152 | 153 | 8. Limitation of Liability. In no event and under no legal theory, 154 | whether in tort (including negligence), contract, or otherwise, 155 | unless required by applicable law (such as deliberate and grossly 156 | negligent acts) or agreed to in writing, shall any Contributor be 157 | liable to You for damages, including any direct, indirect, special, 158 | incidental, or consequential damages of any character arising as a 159 | result of this License or out of the use or inability to use the 160 | Work (including but not limited to damages for loss of goodwill, 161 | work stoppage, computer failure or malfunction, or any and all 162 | other commercial damages or losses), even if such Contributor 163 | has been advised of the possibility of such damages. 164 | 165 | 9. Accepting Warranty or Additional Liability. While redistributing 166 | the Work or Derivative Works thereof, You may choose to offer, 167 | and charge a fee for, acceptance of support, warranty, indemnity, 168 | or other liability obligations and/or rights consistent with this 169 | License. However, in accepting such obligations, You may act only 170 | on Your own behalf and on Your sole responsibility, not on behalf 171 | of any other Contributor, and only if You agree to indemnify, 172 | defend, and hold each Contributor harmless for any liability 173 | incurred by, or claims asserted against, such Contributor by reason 174 | of your accepting any such warranty or additional liability. 175 | 176 | END OF TERMS AND CONDITIONS 177 | 178 | APPENDIX: How to apply the Apache License to your work. 179 | 180 | To apply the Apache License to your work, attach the following 181 | boilerplate notice, with the fields enclosed by brackets "{}" 182 | replaced with your own identifying information. (Don't include 183 | the brackets!) The text should be enclosed in the appropriate 184 | comment syntax for the file format. We also recommend that a 185 | file or class name and description of purpose be included on the 186 | same "printed page" as the copyright notice for easier 187 | identification within third-party archives. 188 | 189 | Copyright {yyyy} {name of copyright owner} 190 | 191 | Licensed under the Apache License, Version 2.0 (the "License"); 192 | you may not use this file except in compliance with the License. 193 | You may obtain a copy of the License at 194 | 195 | http://www.apache.org/licenses/LICENSE-2.0 196 | 197 | Unless required by applicable law or agreed to in writing, software 198 | distributed under the License is distributed on an "AS IS" BASIS, 199 | WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 200 | See the License for the specific language governing permissions and 201 | limitations under the License. 202 | 203 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | # ontology 2 | 3 | [![styled with prettier](https://img.shields.io/badge/styled_with-prettier-ff69b4.svg)](https://github.com/prettier/prettier) 4 | 5 | See: [http://ns.sci.pe](http://ns.sci.pe). 6 | 7 | ## See Also 8 | 9 | - [DoCO, the Document Components Ontology](http://purl.org/spar/doco) 10 | - [DEO, the Discourse Elements Ontology](http://purl.org/spar/deo). 11 | 12 | Note these two ontologies also incorporate 13 | the 14 | [SALT Rhetorical Ontology](http://salt.semanticauthoring.org/ontologies/sro.rdfs) (no 15 | longer maintained). 16 | 17 | - https://github.com/DrInventor/ontologies 18 | - https://github.com/nature/public-npg-core-ontology 19 | 20 | ## Development 21 | 22 | ``` 23 | npm install 24 | npm run watch 25 | 26 | open a browser on port 8080 27 | ``` 28 | 29 | Do **not** edit `index.html` or `context.js` manually, these files are 30 | automatically generated by the code and template in the `lib/` 31 | directory. 32 | -------------------------------------------------------------------------------- /index.js: -------------------------------------------------------------------------------- 1 | module.exports = require('./ontology'); 2 | -------------------------------------------------------------------------------- /lib/context.js: -------------------------------------------------------------------------------- 1 | 'use strict'; 2 | 3 | var ontology = require('../ontology'); 4 | var fs = require('fs'); 5 | var path = require('path'); 6 | var isUrl = require('is-url'); 7 | var context = require('schema.org/context'); 8 | var prefixes = require('../prefixes'); 9 | 10 | /** 11 | * Generate a JSON-LD context 12 | */ 13 | 14 | let ctx = context['@context']; 15 | // patch schema.org context as we don't want type and id to be alias for `@id` and `@type` 16 | delete ctx.type; 17 | delete ctx.id; 18 | 19 | // prefixes 20 | Object.keys(prefixes).forEach(function(key) { 21 | ctx[key] = prefixes[key]; 22 | }); 23 | 24 | // specify container and stricter @type than from the default context 25 | let schemaMap = { 26 | sameAs: { '@container': '@set', '@type': '@id' }, 27 | hasPart: { '@container': '@list', '@type': '@id' }, 28 | encoding: { '@container': '@set', '@type': '@id' }, 29 | distribution: { '@container': '@set', '@type': '@id' }, 30 | review: { '@container': '@set', '@type': '@id' }, 31 | reviewRating: { '@type': '@id' }, 32 | comment: { '@container': '@set', '@type': '@id' }, 33 | agent: { '@type': '@id' }, 34 | participant: { '@container': '@set', '@type': '@id' }, 35 | recipient: { '@type': '@id' }, 36 | sender: { '@type': '@id' }, 37 | messageAttachment: { '@type': '@id' }, 38 | creator: { '@type': '@id' }, 39 | grantee: { '@type': '@id' }, 40 | author: { '@container': '@list', '@type': '@id' }, 41 | producer: { '@container': '@list', '@type': '@id' }, 42 | editor: { '@container': '@list', '@type': '@id' }, 43 | contributor: { '@container': '@list', '@type': '@id' }, 44 | provider: { '@container': '@list', '@type': '@id' }, 45 | affiliation: { '@container': '@list', '@type': '@id' }, 46 | thumbnail: { '@container': '@set', '@type': '@id' }, 47 | isBasedOnUrl: { '@container': '@set', '@type': '@id' }, 48 | isBasedOn: { '@container': '@set', '@type': '@id' }, 49 | encodesCreativeWork: { '@type': '@id' }, 50 | isPartOf: { '@type': '@id' }, 51 | exampleOfWork: { '@container': '@set', '@type': '@id' }, 52 | potentialAction: { '@container': '@set', '@type': '@id' }, 53 | error: { '@type': '@id' }, 54 | result: { '@type': '@id' }, 55 | suggestedResult: { '@type': '@id' }, 56 | resultReview: { '@type': '@id' }, 57 | resultComment: { '@type': '@id' }, 58 | object: { '@type': '@id' }, 59 | about: { '@container': '@set', '@type': '@id' }, 60 | knowsAbout: { '@container': '@set', '@type': '@id' }, 61 | mainEntity: { '@type': '@id' }, 62 | mainEntityOfPage: { '@type': '@id' }, 63 | copyrightHolder: { '@type': '@id' }, 64 | sponsor: { '@container': '@set', '@type': '@id' }, 65 | funder: { '@container': '@set', '@type': '@id' }, 66 | citation: { '@container': '@list', '@type': '@id' }, 67 | keywords: { '@container': '@set' }, 68 | exifData: { '@container': '@set', '@type': '@id' }, 69 | location: { '@type': '@id' }, 70 | address: { '@type': '@id' }, 71 | parentOrganization: { '@type': '@id' }, 72 | expectsAcceptanceOf: { '@type': '@id' }, 73 | publishingPrinciples: { '@type': '@id' }, 74 | instrument: { '@type': '@id' }, 75 | targetCollection: { '@type': '@id' }, 76 | parentItem: { '@type': '@id' }, 77 | question: { '@type': '@id' }, 78 | suggestedAnswer: { '@type': '@id' }, 79 | acceptedAnswer: { '@type': '@id' }, 80 | item: { '@type': '@id' }, 81 | memberOf: { '@type': '@id' }, 82 | itemListElement: { '@container': '@set', '@type': '@id' }, 83 | itemListFacet: { '@container': '@set', '@type': '@id' }, 84 | hasDigitalDocumentPermission: { '@container': '@set', '@type': '@id' }, 85 | priceSpecification: { '@type': '@id' } 86 | }; 87 | 88 | for (let key in schemaMap) { 89 | if (key in ctx) { 90 | if (typeof ctx[key] === 'string') { 91 | ctx[key] = Object.assign({ '@id': ctx[key] }, schemaMap[key]); 92 | } else { 93 | ctx[key] = Object.assign( 94 | ctx[key], 95 | ctx[key]['@id'] ? null : { '@id': ctx['@vocab'] + key }, 96 | schemaMap[key] 97 | ); 98 | } 99 | } else { 100 | ctx[key] = Object.assign( 101 | { 102 | '@id': ctx['@vocab'] + key 103 | }, 104 | schemaMap[key] 105 | ); 106 | } 107 | } 108 | 109 | ctx.datePublished = { '@id': 'http://schema.org/datePublished' }; 110 | ctx.endTime = { '@id': 'http://schema.org/endTime' }; 111 | 112 | // reverse properties currently not in schema.org 113 | ctx.targetProductOf = { 114 | '@reverse': 'http://schema.org/targetProduct', 115 | '@type': '@id' 116 | }; 117 | 118 | // add sa terms 119 | let saContainerMap = { 120 | style: '@set', 121 | roleAction: '@set', 122 | roleAffiliation: '@list', 123 | roleContactPoint: '@set', 124 | contentChecksum: '@set', 125 | permissionScope: '@set', 126 | publicationTypeCoverage: '@set', 127 | note: '@set' 128 | }; 129 | 130 | ontology.defines.forEach(term => { 131 | let key = term['@id'].replace(/^sa:/, ''); 132 | if (term['@type'] === 'rdfs:Class') { 133 | ctx[key] = urlify(term['@id'], ontology); 134 | } else if (term['@type'] === 'rdf:Property') { 135 | let iri = urlify(term['@id'], ontology); 136 | if (key === 'resourceOf' || key === 'isNodeOf') { 137 | // Note: we do note set @type: @id to avoid re-embedding the whole graph during framing 138 | ctx[key] = { 139 | '@id': iri 140 | }; 141 | } else if (term.range === 'schema:Boolean') { 142 | ctx[key] = { 143 | '@id': iri, 144 | '@type': 'xsd:boolean' 145 | }; 146 | } else if ( 147 | /^xsd:|schema:Date|schema:DateTime|schema:Text|schema:Number/.test( 148 | term.range 149 | ) 150 | ) { 151 | ctx[key] = { 152 | '@id': iri, 153 | '@type': term.range 154 | }; 155 | } else { 156 | ctx[key] = { 157 | '@id': iri, 158 | '@type': '@id' 159 | }; 160 | } 161 | if (key in saContainerMap) { 162 | ctx[key]['@container'] = saContainerMap[key]; 163 | } 164 | } 165 | }); 166 | 167 | let pkg = 'module.exports = ' + JSON.stringify(context, null, 2) + ';'; 168 | 169 | fs.writeFileSync(path.join(path.dirname(__dirname), 'context.js'), pkg, { 170 | encoding: 'utf8' 171 | }); 172 | 173 | function urlify(value, ontology) { 174 | if (isUrl(value)) { 175 | return value; 176 | } 177 | 178 | let iri; 179 | let splt = value.split(':'); 180 | let prefix = splt[0]; 181 | if (prefix in ontology['@context']) { 182 | iri = 183 | (ontology['@context'][prefix]['@id'] || ontology['@context'][prefix]) + 184 | splt.slice(1).join(':'); 185 | } else { 186 | let base = ontology['@context']['@base'] || ontology['@context']['@vocab']; 187 | iri = base + value; 188 | } 189 | 190 | return iri; 191 | } 192 | -------------------------------------------------------------------------------- /lib/fonts/Open-Sans-300/Open-Sans-300.eot: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/science-periodicals/ontology/00d912ddde5b42ee4aeb4c96b1b052233fe19f8c/lib/fonts/Open-Sans-300/Open-Sans-300.eot -------------------------------------------------------------------------------- /lib/fonts/Open-Sans-300/Open-Sans-300.svg: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 12 | 13 | 14 | 15 | 17 | 19 | 22 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 36 | 37 | 39 | 41 | 42 | 44 | 46 | 47 | 50 | 52 | 53 | 54 | 55 | 56 | 57 | 59 | 62 | 63 | 65 | 67 | 68 | 69 | 70 | 72 | 73 | 74 | 75 | 76 | 77 | 78 | 79 | 81 | 82 | 84 | 85 | 87 | 88 | 89 | 90 | 92 | 93 | 94 | 95 | 96 | 97 | 98 | 99 | 100 | 101 | 103 | 105 | 106 | 108 | 110 | 111 | 114 | 115 | 116 | 118 | 119 | 120 | 122 | 123 | 125 | 127 | 129 | 130 | 132 | 133 | 134 | 135 | 137 | 138 | 140 | 141 | 143 | 144 | 146 | 147 | 148 | 149 | 151 | 153 | 155 | 156 | 157 | 160 | 161 | 164 | 166 | 167 | 168 | 169 | 172 | 173 | 175 | 176 | 178 | 180 | 181 | 182 | 183 | 184 | 185 | 186 | 188 | 189 | 191 | 193 | 196 | 198 | 200 | 202 | 204 | 206 | 208 | 210 | 211 | 213 | 214 | 215 | 216 | 218 | 219 | 220 | 221 | 223 | 224 | 226 | 228 | 230 | 232 | 235 | 237 | 238 | 240 | 242 | 244 | 246 | 248 | 249 | 250 | 253 | 255 | 257 | 259 | 262 | 265 | 268 | 271 | 273 | 275 | 277 | 279 | 281 | 282 | 283 | 284 | 286 | 288 | 290 | 292 | 294 | 296 | 299 | 301 | 303 | 305 | 307 | 309 | 311 | 313 | 315 | 317 | 319 | 320 | 321 | 322 | 323 | 324 | 325 | 326 | 327 | 328 | 329 | 330 | 331 | 332 | 333 | 334 | 335 | 336 | 337 | 338 | 339 | 340 | 341 | 342 | 343 | 344 | 345 | 346 | 347 | 348 | 349 | 350 | 351 | 352 | 353 | 354 | 355 | 356 | 357 | 358 | 359 | 360 | 361 | 362 | 363 | 364 | 365 | 366 | 367 | 368 | 369 | 370 | 371 | 372 | 373 | 374 | 375 | 376 | 377 | 378 | 379 | 380 | 381 | 382 | 383 | 384 | 385 | 386 | 387 | 388 | 389 | 390 | 391 | 392 | 393 | 394 | 395 | 396 | 397 | 398 | 399 | 400 | 401 | 402 | 403 | 404 | 405 | 406 | 407 | 408 | 409 | 410 | 411 | 412 | 413 | 414 | 415 | 416 | 417 | 418 | 419 | 420 | 421 | 422 | 423 | 424 | 425 | 426 | 427 | 428 | 429 | 430 | 431 | 432 | 433 | 434 | 435 | 436 | 437 | 438 | 439 | 440 | 441 | 442 | 443 | 444 | 445 | 446 | 447 | 448 | 449 | 450 | 451 | 452 | 453 | 454 | 455 | 456 | 457 | 458 | 459 | 460 | 461 | 462 | 463 | 464 | 465 | 466 | 467 | 468 | 469 | 470 | 471 | 472 | 473 | 474 | 475 | 476 | 477 | 478 | 479 | 480 | 481 | 482 | 483 | 484 | 485 | 486 | 487 | 488 | 489 | 490 | 491 | 492 | 493 | 494 | 495 | 496 | 497 | 498 | 499 | 500 | 501 | 502 | 503 | 504 | 505 | 506 | 507 | 508 | 509 | 510 | 511 | 512 | 513 | 514 | 515 | 516 | 517 | 518 | 519 | 520 | 521 | 522 | 523 | 524 | 525 | 526 | 527 | 528 | 529 | 530 | 531 | 532 | 533 | 534 | 535 | 536 | 537 | 538 | 539 | 540 | 541 | 542 | 543 | 544 | 545 | 546 | 547 | 548 | 549 | 550 | 551 | 552 | 553 | 554 | 555 | 556 | 557 | 558 | 559 | 560 | 561 | 562 | 563 | 564 | 565 | 566 | 567 | 568 | 569 | 570 | 571 | 572 | 573 | 574 | 575 | 576 | 577 | 578 | 579 | 580 | 581 | 582 | 583 | 584 | 585 | 586 | 587 | 588 | 589 | 590 | 591 | 592 | 593 | 594 | 595 | 596 | 597 | 598 | 599 | 600 | 601 | 602 | 603 | 604 | 605 | 606 | 607 | 608 | 609 | 610 | 611 | 612 | 613 | 614 | 615 | 616 | 617 | 618 | 619 | 620 | 621 | 622 | 623 | 624 | 625 | 626 | 627 | 628 | 629 | 630 | 631 | 632 | 633 | 634 | 635 | 636 | 637 | 638 | 639 | 640 | 641 | 642 | 643 | 644 | 645 | 646 | 647 | 648 | 649 | 650 | 651 | 652 | 653 | 654 | 655 | 656 | 657 | 658 | 659 | 660 | 661 | 662 | 663 | 664 | 665 | 666 | 667 | 668 | 669 | 670 | 671 | 672 | 673 | 674 | 675 | 676 | 677 | 678 | 679 | 680 | 681 | 682 | 683 | 684 | 685 | 686 | 687 | 688 | 689 | 690 | 691 | 692 | 693 | 694 | 695 | 696 | 697 | 698 | 699 | 700 | 701 | 702 | 703 | 704 | 705 | 706 | 707 | 708 | 709 | 710 | 711 | 712 | 713 | 714 | 715 | 716 | 717 | 718 | 719 | 720 | 721 | 722 | 723 | 724 | 725 | 726 | 727 | 728 | 729 | 730 | 731 | 732 | 733 | 734 | 735 | 736 | 737 | 738 | 739 | 740 | 741 | 742 | 743 | 744 | 745 | 746 | 747 | 748 | 749 | 750 | 751 | 752 | 753 | 754 | 755 | 756 | 757 | 758 | 759 | 760 | 761 | 762 | 763 | 764 | 765 | 766 | 767 | 768 | 769 | 770 | 771 | 772 | 773 | 774 | 775 | 776 | 777 | 778 | 779 | 780 | 781 | 782 | 783 | 784 | 785 | 786 | 787 | 788 | 789 | 790 | 791 | 792 | 793 | 794 | 795 | 796 | 797 | 798 | 799 | 800 | 801 | 802 | 803 | 804 | 805 | 806 | 807 | 808 | 809 | 810 | 811 | 812 | 813 | 814 | 815 | 816 | 817 | 818 | 819 | 820 | 821 | 822 | 823 | 824 | 825 | 826 | 827 | 828 | 829 | 830 | 831 | 832 | 833 | 834 | 835 | 836 | 837 | 838 | 839 | 840 | 841 | 842 | 843 | 844 | 845 | 846 | 847 | 848 | 849 | 850 | 851 | 852 | 853 | 854 | 855 | 856 | 857 | 858 | 859 | 860 | 861 | 862 | 863 | 864 | 865 | 866 | 867 | 868 | 869 | 870 | 871 | 872 | 873 | 874 | 875 | 876 | 877 | 878 | 879 | 880 | 881 | 882 | 883 | 884 | 885 | 886 | 887 | 888 | 889 | 890 | 891 | 892 | 893 | 894 | 895 | 896 | 897 | 898 | 899 | 900 | 901 | 902 | 903 | 904 | 905 | 906 | 907 | 908 | 909 | 910 | 911 | 912 | 913 | 914 | 915 | 916 | 917 | 918 | 919 | 920 | 921 | 922 | 923 | 924 | 925 | 926 | 927 | 928 | 929 | 930 | 931 | 932 | 933 | 934 | 935 | 936 | 937 | 938 | 939 | 940 | 941 | 942 | 943 | 944 | 945 | 946 | 947 | 948 | 949 | 950 | 951 | 952 | 953 | 954 | 955 | 956 | 957 | 958 | 959 | 960 | 961 | 962 | 963 | 964 | 965 | 966 | 967 | 968 | 969 | 970 | 971 | 972 | 973 | 974 | 975 | 976 | 977 | 978 | 979 | 980 | 981 | 982 | 983 | 984 | 985 | 986 | 987 | 988 | 989 | 990 | 991 | 992 | 993 | 994 | 995 | 996 | 997 | 998 | 999 | 1000 | 1001 | 1002 | 1003 | 1004 | 1005 | 1006 | 1007 | 1008 | 1009 | 1010 | 1011 | 1012 | 1013 | 1014 | 1015 | 1016 | 1017 | 1018 | 1019 | 1020 | 1021 | 1022 | 1023 | 1024 | 1025 | 1026 | 1027 | 1028 | 1029 | 1030 | 1031 | 1032 | 1033 | 1034 | 1035 | 1036 | 1037 | 1038 | 1039 | 1040 | 1041 | 1042 | 1043 | 1044 | 1045 | 1046 | 1047 | 1048 | 1049 | 1050 | 1051 | 1052 | 1053 | 1054 | 1055 | 1056 | 1057 | 1058 | 1059 | 1060 | 1061 | 1062 | 1063 | 1064 | 1065 | 1066 | 1067 | 1068 | 1069 | 1070 | 1071 | 1072 | 1073 | 1074 | 1075 | 1076 | 1077 | 1078 | 1079 | 1080 | 1081 | 1082 | 1083 | 1084 | 1085 | 1086 | 1087 | 1088 | 1089 | 1090 | 1091 | 1092 | 1093 | 1094 | 1095 | 1096 | 1097 | 1098 | 1099 | 1100 | 1101 | 1102 | 1103 | 1104 | 1105 | 1106 | 1107 | 1108 | 1109 | 1110 | 1111 | 1112 | 1113 | 1114 | 1115 | 1116 | 1117 | 1118 | 1119 | 1120 | 1121 | 1122 | 1123 | 1124 | 1125 | 1126 | 1127 | 1128 | 1129 | 1130 | 1131 | 1132 | 1133 | 1134 | 1135 | 1136 | 1137 | 1138 | 1139 | 1140 | 1141 | 1142 | 1143 | 1144 | 1145 | 1146 | 1147 | 1148 | 1149 | 1150 | 1151 | 1152 | 1153 | 1154 | 1155 | 1156 | 1157 | 1158 | 1159 | 1160 | 1161 | 1162 | 1163 | 1164 | 1165 | 1166 | 1167 | 1168 | 1169 | 1170 | 1171 | 1172 | 1173 | 1174 | 1175 | 1176 | 1177 | 1178 | 1179 | 1180 | 1181 | 1182 | 1183 | 1184 | 1185 | 1186 | 1187 | 1188 | 1189 | 1190 | 1191 | 1192 | 1193 | 1194 | 1195 | 1196 | 1197 | 1198 | 1199 | 1200 | 1201 | 1202 | 1203 | 1204 | 1205 | 1206 | 1207 | 1208 | 1209 | 1210 | 1211 | 1212 | 1213 | 1214 | 1215 | 1216 | 1217 | 1218 | 1219 | 1220 | 1221 | 1222 | 1223 | 1224 | 1225 | 1226 | 1227 | 1228 | 1229 | 1230 | 1231 | 1232 | 1233 | 1234 | 1235 | 1236 | 1237 | 1238 | 1239 | 1240 | 1241 | 1242 | 1243 | 1244 | 1245 | 1246 | 1247 | 1248 | 1249 | 1250 | 1251 | 1252 | 1253 | 1254 | 1255 | 1256 | 1257 | 1258 | 1259 | 1260 | 1261 | 1262 | 1263 | 1264 | 1265 | 1266 | 1267 | 1268 | 1269 | 1270 | 1271 | 1272 | 1273 | 1274 | 1275 | 1276 | 1277 | 1278 | 1279 | 1280 | 1281 | 1282 | 1283 | 1284 | 1285 | 1286 | 1287 | 1288 | 1289 | 1290 | 1291 | 1292 | 1293 | 1294 | 1295 | 1296 | 1297 | 1298 | 1299 | 1300 | 1301 | 1302 | 1303 | 1304 | 1305 | 1306 | 1307 | 1308 | 1309 | 1310 | 1311 | 1312 | 1313 | 1314 | 1315 | 1316 | 1317 | 1318 | 1319 | 1320 | 1321 | 1322 | 1323 | 1324 | 1325 | 1326 | 1327 | 1328 | 1329 | 1330 | 1331 | 1332 | 1333 | 1334 | 1335 | 1336 | 1337 | 1338 | 1339 | 1340 | 1341 | 1342 | 1343 | 1344 | 1345 | 1346 | 1347 | 1348 | 1349 | 1350 | 1351 | 1352 | 1353 | 1354 | 1355 | 1356 | 1357 | 1358 | 1359 | 1360 | 1361 | 1362 | 1363 | 1364 | 1365 | 1366 | 1367 | 1368 | 1369 | 1370 | 1371 | 1372 | 1373 | 1374 | 1375 | 1376 | 1377 | 1378 | 1379 | 1380 | 1381 | 1382 | 1383 | 1384 | 1385 | 1386 | 1387 | 1388 | 1389 | 1390 | 1391 | 1392 | 1393 | 1394 | 1395 | 1396 | 1397 | 1398 | 1399 | 1400 | 1401 | 1402 | 1403 | 1404 | 1405 | 1406 | 1407 | 1408 | 1409 | 1410 | 1411 | 1412 | 1413 | 1414 | 1415 | 1416 | 1417 | 1418 | 1419 | 1420 | 1421 | 1422 | 1423 | 1424 | 1425 | 1426 | 1427 | 1428 | 1429 | 1430 | 1431 | 1432 | 1433 | 1434 | 1435 | 1436 | 1437 | 1438 | 1439 | 1440 | 1441 | 1442 | 1443 | 1444 | 1445 | 1446 | 1447 | 1448 | 1449 | 1450 | 1451 | 1452 | 1453 | 1454 | 1455 | 1456 | 1457 | 1458 | 1459 | 1460 | 1461 | 1462 | 1463 | 1464 | 1465 | 1466 | 1467 | 1468 | 1469 | 1470 | 1471 | 1472 | 1473 | 1474 | 1475 | 1476 | 1477 | 1478 | 1479 | 1480 | 1481 | 1482 | 1483 | 1484 | 1485 | 1486 | 1487 | 1488 | 1489 | 1490 | 1491 | 1492 | 1493 | 1494 | 1495 | 1496 | 1497 | 1498 | 1499 | 1500 | 1501 | 1502 | 1503 | 1504 | 1505 | 1506 | 1507 | 1508 | 1509 | 1510 | 1511 | 1512 | 1513 | 1514 | 1515 | 1516 | 1517 | 1518 | 1519 | 1520 | 1521 | 1522 | 1523 | 1524 | 1525 | 1526 | 1527 | 1528 | 1529 | 1530 | 1531 | 1532 | 1533 | 1534 | 1535 | 1536 | 1537 | 1538 | 1539 | 1540 | 1541 | 1542 | 1543 | 1544 | 1545 | 1546 | 1547 | 1548 | 1549 | 1550 | 1551 | 1552 | 1553 | 1554 | 1555 | 1556 | 1557 | 1558 | 1559 | 1560 | 1561 | 1562 | 1563 | 1564 | 1565 | 1566 | 1567 | 1568 | 1569 | 1570 | 1571 | 1572 | 1573 | 1574 | 1575 | 1576 | 1577 | 1578 | 1579 | 1580 | 1581 | 1582 | 1583 | 1584 | 1585 | 1586 | 1587 | 1588 | 1589 | 1590 | 1591 | 1592 | 1593 | 1594 | 1595 | 1596 | 1597 | 1598 | 1599 | 1600 | 1601 | 1602 | 1603 | 1604 | 1605 | 1606 | 1607 | 1608 | 1609 | 1610 | 1611 | 1612 | 1613 | 1614 | 1615 | 1616 | 1617 | 1618 | 1619 | 1620 | 1621 | 1622 | 1623 | 1624 | 1625 | 1626 | 1627 | 1628 | 1629 | 1630 | 1631 | 1632 | 1633 | 1634 | -------------------------------------------------------------------------------- /lib/fonts/Open-Sans-300/Open-Sans-300.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/science-periodicals/ontology/00d912ddde5b42ee4aeb4c96b1b052233fe19f8c/lib/fonts/Open-Sans-300/Open-Sans-300.ttf -------------------------------------------------------------------------------- /lib/fonts/Open-Sans-300/Open-Sans-300.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/science-periodicals/ontology/00d912ddde5b42ee4aeb4c96b1b052233fe19f8c/lib/fonts/Open-Sans-300/Open-Sans-300.woff -------------------------------------------------------------------------------- /lib/fonts/Open-Sans-300/Open-Sans-300.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/science-periodicals/ontology/00d912ddde5b42ee4aeb4c96b1b052233fe19f8c/lib/fonts/Open-Sans-300/Open-Sans-300.woff2 -------------------------------------------------------------------------------- /lib/fonts/Open-Sans-300italic/Open-Sans-300italic.eot: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/science-periodicals/ontology/00d912ddde5b42ee4aeb4c96b1b052233fe19f8c/lib/fonts/Open-Sans-300italic/Open-Sans-300italic.eot -------------------------------------------------------------------------------- /lib/fonts/Open-Sans-300italic/Open-Sans-300italic.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/science-periodicals/ontology/00d912ddde5b42ee4aeb4c96b1b052233fe19f8c/lib/fonts/Open-Sans-300italic/Open-Sans-300italic.ttf -------------------------------------------------------------------------------- /lib/fonts/Open-Sans-300italic/Open-Sans-300italic.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/science-periodicals/ontology/00d912ddde5b42ee4aeb4c96b1b052233fe19f8c/lib/fonts/Open-Sans-300italic/Open-Sans-300italic.woff -------------------------------------------------------------------------------- /lib/fonts/Open-Sans-300italic/Open-Sans-300italic.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/science-periodicals/ontology/00d912ddde5b42ee4aeb4c96b1b052233fe19f8c/lib/fonts/Open-Sans-300italic/Open-Sans-300italic.woff2 -------------------------------------------------------------------------------- /lib/fonts/Open-Sans-600/Open-Sans-600.eot: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/science-periodicals/ontology/00d912ddde5b42ee4aeb4c96b1b052233fe19f8c/lib/fonts/Open-Sans-600/Open-Sans-600.eot -------------------------------------------------------------------------------- /lib/fonts/Open-Sans-600/Open-Sans-600.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/science-periodicals/ontology/00d912ddde5b42ee4aeb4c96b1b052233fe19f8c/lib/fonts/Open-Sans-600/Open-Sans-600.ttf -------------------------------------------------------------------------------- /lib/fonts/Open-Sans-600/Open-Sans-600.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/science-periodicals/ontology/00d912ddde5b42ee4aeb4c96b1b052233fe19f8c/lib/fonts/Open-Sans-600/Open-Sans-600.woff -------------------------------------------------------------------------------- /lib/fonts/Open-Sans-600/Open-Sans-600.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/science-periodicals/ontology/00d912ddde5b42ee4aeb4c96b1b052233fe19f8c/lib/fonts/Open-Sans-600/Open-Sans-600.woff2 -------------------------------------------------------------------------------- /lib/fonts/Open-Sans-600italic/Open-Sans-600italic.eot: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/science-periodicals/ontology/00d912ddde5b42ee4aeb4c96b1b052233fe19f8c/lib/fonts/Open-Sans-600italic/Open-Sans-600italic.eot -------------------------------------------------------------------------------- /lib/fonts/Open-Sans-600italic/Open-Sans-600italic.ttf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/science-periodicals/ontology/00d912ddde5b42ee4aeb4c96b1b052233fe19f8c/lib/fonts/Open-Sans-600italic/Open-Sans-600italic.ttf -------------------------------------------------------------------------------- /lib/fonts/Open-Sans-600italic/Open-Sans-600italic.woff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/science-periodicals/ontology/00d912ddde5b42ee4aeb4c96b1b052233fe19f8c/lib/fonts/Open-Sans-600italic/Open-Sans-600italic.woff -------------------------------------------------------------------------------- /lib/fonts/Open-Sans-600italic/Open-Sans-600italic.woff2: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/science-periodicals/ontology/00d912ddde5b42ee4aeb4c96b1b052233fe19f8c/lib/fonts/Open-Sans-600italic/Open-Sans-600italic.woff2 -------------------------------------------------------------------------------- /lib/index.css: -------------------------------------------------------------------------------- 1 | @font-face { 2 | font-family: 'Open Sans'; 3 | font-weight: 300; 4 | font-style: normal; 5 | src: url('fonts/Open-Sans-300/Open-Sans-300.eot'); 6 | src: url('fonts/Open-Sans-300/Open-Sans-300.eot?#iefix') format('embedded-opentype'), 7 | local('Open Sans Light'), 8 | local('Open-Sans-300'), 9 | url('fonts/Open-Sans-300/Open-Sans-300.woff2') format('woff2'), 10 | url('fonts/Open-Sans-300/Open-Sans-300.woff') format('woff'), 11 | url('fonts/Open-Sans-300/Open-Sans-300.ttf') format('truetype'), 12 | url('fonts/Open-Sans-300/Open-Sans-300.svg#OpenSans') format('svg'); 13 | } 14 | 15 | @font-face { 16 | font-family: 'Open Sans'; 17 | font-weight: 600; 18 | font-style: normal; 19 | src: url('fonts/Open-Sans-600/Open-Sans-600.eot'); 20 | src: url('fonts/Open-Sans-600/Open-Sans-600.eot?#iefix') format('embedded-opentype'), 21 | local('Open Sans Semibold'), 22 | local('Open-Sans-600'), 23 | url('fonts/Open-Sans-600/Open-Sans-600.woff2') format('woff2'), 24 | url('fonts/Open-Sans-600/Open-Sans-600.woff') format('woff'), 25 | url('fonts/Open-Sans-600/Open-Sans-600.ttf') format('truetype'), 26 | url('fonts/Open-Sans-600/Open-Sans-600.svg#OpenSans') format('svg'); 27 | } 28 | 29 | @font-face { 30 | font-family: 'Open Sans'; 31 | font-weight: 300; 32 | font-style: italic; 33 | src: url('fonts/Open-Sans-300italic/Open-Sans-300italic.eot'); 34 | src: url('fonts/Open-Sans-300italic/Open-Sans-300italic.eot?#iefix') format('embedded-opentype'), 35 | local('Open Sans Light Italic'), 36 | local('Open-Sans-300italic'), 37 | url('fonts/Open-Sans-300italic/Open-Sans-300italic.woff2') format('woff2'), 38 | url('fonts/Open-Sans-300italic/Open-Sans-300italic.woff') format('woff'), 39 | url('fonts/Open-Sans-300italic/Open-Sans-300italic.ttf') format('truetype'), 40 | url('fonts/Open-Sans-300italic/Open-Sans-300italic.svg#OpenSans') format('svg'); 41 | } 42 | 43 | @font-face { 44 | font-family: 'Open Sans'; 45 | font-weight: 600; 46 | font-style: italic; 47 | src: url('fonts/Open-Sans-600italic/Open-Sans-600italic.eot'); 48 | src: url('fonts/Open-Sans-600italic/Open-Sans-600italic.eot?#iefix') format('embedded-opentype'), 49 | local('Open Sans Semibold Italic'), 50 | local('Open-Sans-600italic'), 51 | url('fonts/Open-Sans-600italic/Open-Sans-600italic.woff2') format('woff2'), 52 | url('fonts/Open-Sans-600italic/Open-Sans-600italic.woff') format('woff'), 53 | url('fonts/Open-Sans-600italic/Open-Sans-600italic.ttf') format('truetype'), 54 | url('fonts/Open-Sans-600italic/Open-Sans-600italic.svg#OpenSans') format('svg'); 55 | } 56 | 57 | * { 58 | box-sizing: border-box; 59 | } 60 | 61 | body { 62 | margin: 0px; 63 | background: #fff; 64 | padding-bottom: 50px; 65 | color: #434343; 66 | font-family: "Open Sans", sans-serif; 67 | font-weight: 400; 68 | font-size: 14px; 69 | line-height: 24px; 70 | } 71 | 72 | .scienceai { 73 | background-color: #fff; 74 | padding: 8px 25px; 75 | width: 100%; 76 | border-top:1px solid #E0E0E0; 77 | border-bottom:1px solid #E0E0E0; 78 | display:inline-block; 79 | vertical-align: middle; 80 | height: 52px; 81 | margin-bottom: 10px; 82 | position: fixed; 83 | top:0px; 84 | z-index: 100; 85 | box-shadow: 2px 2px 5px #BCBCBC; 86 | } 87 | 88 | main { 89 | margin: 43px auto; 90 | max-width: 1024px; 91 | min-height: 500px; 92 | padding:0 2em; 93 | } 94 | 95 | 96 | .title { 97 | text-align: center; 98 | margin-top: 88px; 99 | } 100 | 101 | 102 | h1, h2, h3, h4 { 103 | font-weight: 400; 104 | letter-spacing: .08em; 105 | page-break-after: avoid; 106 | } 107 | 108 | h1, h2{ 109 | text-transform: uppercase; 110 | } 111 | 112 | h1 { 113 | font-size: 2em; 114 | margin-bottom: 2em; 115 | } 116 | 117 | a { 118 | color: #2196f3; 119 | } 120 | a, :link, :visited { 121 | text-decoration: none; 122 | color: #2196f3; 123 | } 124 | 125 | a:active { 126 | color: #64b5f6; 127 | } 128 | 129 | nav ul li { 130 | display: inline-block; 131 | margin: 0px 1em 0px 0px; 132 | } 133 | 134 | article dt::after { 135 | content: ":"; 136 | } 137 | 138 | 139 | article ul { 140 | padding-left: 0; 141 | margin-left: 0; 142 | } 143 | 144 | article ul li { 145 | background-color: whitesmoke; 146 | list-style: none; 147 | margin-left: 0; 148 | margin-bottom: 20px; 149 | border-radius: 8px; 150 | padding: 10px 40px 20px 40px; 151 | } 152 | 153 | article dd li { 154 | list-style: circle; 155 | padding: 0px; 156 | margin-bottom: 0px; 157 | } 158 | 159 | article li h3 { 160 | border-bottom: 2px solid white; 161 | padding-bottom: 16px; 162 | } 163 | 164 | 165 | @media screen and (max-width: 640px) { 166 | body { 167 | margin: 0 auto; 168 | padding: 1px; 169 | font-size: 0.9em; 170 | } 171 | 172 | a { 173 | word-wrap: break-word; 174 | } 175 | } 176 | 177 | /* D3 chart */ 178 | 179 | .hidden { 180 | display: none; 181 | } 182 | -------------------------------------------------------------------------------- /lib/index.js: -------------------------------------------------------------------------------- 1 | var ontology = require('../ontology'); 2 | var jsdom = require('jsdom'); 3 | var isUrl = require('is-url'); 4 | var fs = require('fs'); 5 | var path = require('path'); 6 | 7 | var dom = new jsdom.JSDOM( 8 | fs.readFileSync(path.join(__dirname, 'template.html'), { encoding: 'utf8' }) 9 | ); 10 | 11 | var document = dom.window.document; 12 | 13 | // inject table of content (overview) 14 | 15 | [ 16 | { '@type': 'rdfs:Class', id: 'overview-classes' }, 17 | { '@type': 'rdf:Property', id: 'overview-properties' }, 18 | { id: 'overview-enumeration-members' } 19 | ].forEach(x => { 20 | let terms = ontology.defines 21 | .filter(term => { 22 | if (x['@type']) { 23 | return term['@type'] === x['@type']; 24 | } else { 25 | return ( 26 | term['@type'] !== 'rdfs:Class' && term['@type'] !== 'rdf:Property' 27 | ); 28 | } 29 | }) 30 | .sort((a, b) => { 31 | return a.label.localeCompare(b.label); 32 | }); 33 | 34 | let $ul = document.getElementById(x.id); 35 | terms.forEach(term => { 36 | let id = term['@id'].split(':')[1]; 37 | let $li = document.createElement('li'); 38 | $li.innerHTML = `${id}`; 39 | $ul.appendChild($li); 40 | }); 41 | }); 42 | 43 | // inject ontology in RDFa 44 | 45 | let $article = document.createElement('article'); 46 | $article.setAttribute( 47 | 'prefix', 48 | ['schema', 'sa', 'rdfs', 'rdf', 'owl', 'dc', 'skos'] 49 | .map(x => `${x}: ${ontology['@context'][x]}`) 50 | .join(' ') 51 | ); 52 | 53 | [ 54 | { '@type': 'rdfs:Class', label: 'Classes' }, 55 | { '@type': 'rdf:Property', label: 'Properties' }, 56 | { label: 'Enumeration members' } 57 | ].forEach(x => { 58 | let $section = document.createElement('section'); 59 | let $h2 = document.createElement('h2'); 60 | $h2.textContent = x.label; 61 | $section.appendChild($h2); 62 | 63 | let $ul = document.createElement('ul'); 64 | 65 | let terms = ontology.defines 66 | .filter(term => { 67 | if (x['@type']) { 68 | return term['@type'] === x['@type']; 69 | } else { 70 | return ( 71 | term['@type'] !== 'rdfs:Class' && term['@type'] !== 'rdf:Property' 72 | ); 73 | } 74 | }) 75 | .sort((a, b) => { 76 | return a.label.localeCompare(b.label); 77 | }); 78 | 79 | terms.forEach(term => { 80 | let $li = document.createElement('li'); 81 | $li.setAttribute('typeof', term['@type']); 82 | $li.setAttribute('resource', term['@id']); 83 | $li.setAttribute( 84 | 'id', 85 | term['@id'] 86 | .split(':') 87 | .slice(1) 88 | .join(':') 89 | ); 90 | 91 | let $meta = document.createElement('meta'); 92 | $meta.setAttribute('property', 'rdfs:isDefinedBy'); 93 | $meta.setAttribute('content', ontology['@id']); 94 | 95 | $li.appendChild($meta); 96 | 97 | let $h3 = document.createElement('h3'); 98 | $h3.setAttribute('property', 'label'); 99 | $h3.textContent = term.label; 100 | $li.appendChild($h3); 101 | 102 | let $p = document.createElement('p'); 103 | $p.setAttribute('property', 'rdfs:comment'); 104 | $p.innerHTML = term.comment; 105 | $li.appendChild($p); 106 | 107 | let $dl = document.createElement('dl'); 108 | 109 | [ 110 | 'altLabel', 111 | '@id', 112 | '@type', 113 | 'subClassOf', 114 | 'range', 115 | 'domain', 116 | 'sameAs', 117 | 'source', 118 | 'seeAlso' 119 | ].forEach(prop => { 120 | if ( 121 | !term[prop] || 122 | term[prop][0] == null || 123 | (prop === '@type' && 124 | (term['@type'] === 'rdfs:Class' || term['@type'] === 'rdf:Property')) 125 | ) { 126 | return; 127 | } 128 | 129 | let $dt = document.createElement('dt'); 130 | if (prop === '@id') { 131 | $dt.textContent = 'URL'; 132 | } else if (prop === '@type') { 133 | $dt.textContent = 'enumeration'; 134 | } else if (prop === 'subClassOf') { 135 | $dt.textContent = 'subclass of'; 136 | } else if (prop === 'seeAlso') { 137 | $dt.textContent = 'see also'; 138 | } else if (prop === 'altLabel') { 139 | $dt.textContent = 'alternate label'; 140 | } else { 141 | $dt.textContent = prop; 142 | } 143 | $dl.appendChild($dt); 144 | 145 | let $dd = document.createElement('dd'); 146 | let $ul = document.createElement('ul'); 147 | let values = Array.isArray(term[prop]) ? term[prop] : [term[prop]]; 148 | values.forEach(value => { 149 | let $li = document.createElement('li'); 150 | let $a = document.createElement( 151 | prop === 'label' || prop === 'altLabel' ? 'span' : 'a' 152 | ); 153 | if (prop.charAt(0) !== '@') { 154 | $a.setAttribute( 155 | 'property', 156 | ontology['@context'][prop]['@id'] || ontology['@context'][prop] 157 | ); 158 | } 159 | 160 | let href, target; 161 | if (isUrl(value)) { 162 | href = value; 163 | target = value; 164 | } else { 165 | let splt = value.split(':'); 166 | let prefix = splt[0]; 167 | if (prefix in ontology['@context']) { 168 | target = splt.slice(1).join(':'); 169 | href = 170 | (ontology['@context'][prefix]['@id'] || 171 | ontology['@context'][prefix]) + target; 172 | if (prop.charAt(0) === '@') { 173 | target = href; 174 | } 175 | } else { 176 | let base = 177 | ontology['@context']['@base'] || ontology['@context']['@vocab']; 178 | href = base + value; 179 | target = value; 180 | } 181 | } 182 | if ($a.tagName === 'A') { 183 | $a.setAttribute('href', href); 184 | } 185 | $a.textContent = target; 186 | $li.appendChild($a); 187 | $ul.appendChild($li); 188 | }); 189 | $dd.appendChild($ul); 190 | $dl.appendChild($dd); 191 | }); 192 | $li.appendChild($dl); 193 | 194 | $ul.appendChild($li); 195 | }); 196 | $section.appendChild($ul); 197 | 198 | $article.appendChild($section); 199 | }); 200 | 201 | let $main = document.querySelector('main'); 202 | $main.appendChild($article); 203 | 204 | fs.writeFileSync( 205 | path.join(path.dirname(__dirname), 'index.html'), 206 | dom.serialize(), 207 | { encoding: 'utf8' } 208 | ); 209 | -------------------------------------------------------------------------------- /lib/template.html: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | 5 | 6 | sci.pe ontology (SA) 7 | 8 | 9 | 10 | 11 |
12 | 13 |
14 | 15 |
16 |
17 |

sci.pe ontology

18 |
19 | 20 |

21 | The 'sci.pe ontology' (SA) 22 | is a set of terms (formally defined 23 | in RDF Schema) necessary 24 | to describe the production process, content and preservation of 25 | scholarly articles (and similar artifacts). 26 |

27 | 28 |

29 | The 'sci.pe ontology' (SA) 30 | is aimed to be used along 31 | with schema.org and in 32 | particular, 33 | the ScholarlyArticle 34 | class (and subclasses). When possible, SA terms of broad interest will be proposed to 35 | schema.org and removed from this ontology if accepted. 36 |

37 | 38 |

39 | The 'sci.pe ontology' (SA) 40 | uses the semantic of 41 | schema.org Role. Roles are especially 42 | useful for concepts of scholarly communication such as author 43 | affiliations, correspondence and sources of funding as these concepts 44 | are often specific to a persona (e.g., a person as an author of a given 45 | work) as opposed to the person in general. For instance, a person can 46 | be affiliated with N institutions but have contributed to a a given work 47 | only within a subset of the institutions he is affiliated to. 48 |

49 | 50 |

51 | Readers not familiar with the semantic of schema.org Role can consult 52 | the introductory 53 | blog post. 54 |

55 | 56 |

Namespace

57 | 58 |

59 | http://ns.sci.pe#, prefixed 60 | as sa. 61 |

62 | 63 | 64 |

Context

65 | 66 |

67 | A JSON-LD context is 68 | available at https://sci.pe (requires 69 | a Accept: application/ld+json header). 70 |

71 | 72 | 84 | 85 |

Example

86 | 87 |

88 | See sci.pe 89 | archive for JSON-LD and RDFa examples. 90 |

91 | 92 |
93 | 94 | 95 | 96 | -------------------------------------------------------------------------------- /logo.svg: -------------------------------------------------------------------------------- 1 | 2 | 3 | 4 | sci.pe-logo-menubar-h48px 5 | Created with Sketch. 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | -------------------------------------------------------------------------------- /package.json: -------------------------------------------------------------------------------- 1 | { 2 | "name": "@scipe/ontology", 3 | "version": "23.0.0", 4 | "description": "schema.org extension to describe the production process, content, distribution and preservation of scholarly articles (and similar artifacts)", 5 | "main": "index.js", 6 | "scripts": { 7 | "build-website": "node ./lib/index.js", 8 | "build-context": "node ./lib/context.js", 9 | "build": "browserify index.js > ontology-browser.js && npm run build-website && npm run build-context", 10 | "prepare": "npm run build", 11 | "test": "mocha", 12 | "watch": "http-server & nodemon -e js,html,css -w ./lib/ --ignore lib/bundle.js --exec 'npm run build-website'", 13 | "postversion": "git push && git push --tags" 14 | }, 15 | "repository": { 16 | "type": "git", 17 | "url": "git+https://github.com/science-periodicals/ontology.git" 18 | }, 19 | "keywords": [ 20 | "schema", 21 | "scholarly", 22 | "article", 23 | "ontology", 24 | "JSON-LD" 25 | ], 26 | "eslintConfig": { 27 | "extends": "@scipe" 28 | }, 29 | "author": "Sebastien Ballesteros", 30 | "license": "Apache-2.0", 31 | "bugs": { 32 | "url": "https://github.com/science-periodicals/ontology/issues" 33 | }, 34 | "homepage": "https://github.com/science-periodicals/ontology#readme", 35 | "devDependencies": { 36 | "@scipe/eslint-config": "^1.0.0", 37 | "browserify": "^16.2.3", 38 | "is-url": "^1.2.4", 39 | "jsdom": "^11.12.0", 40 | "mocha": "^6.1.3", 41 | "nodemon": "^1.18.11", 42 | "schema.org": "^3.1.1" 43 | } 44 | } 45 | -------------------------------------------------------------------------------- /prefixes.js: -------------------------------------------------------------------------------- 1 | module.exports = { 2 | xml: 'http://www.w3.org/XML/1998/namespace', 3 | rdf: 'http://www.w3.org/1999/02/22-rdf-syntax-ns#', 4 | rdfs: 'http://www.w3.org/2000/01/rdf-schema#', 5 | owl: 'http://www.w3.org/2002/07/owl#', 6 | schema: 'http://schema.org/', 7 | xsd: 'http://www.w3.org/2001/XMLSchema#', // make sure that xsd prefix is present as we use it for typed dates 8 | sa: 'http://ns.sci.pe#', 9 | spdx: 'https://spdx.org/licenses/', 10 | 11 | // subjects 12 | subjects: 'http://ns.nature.com/subjects/', 13 | 14 | // sci.pe API 15 | user: 'https://sci.pe/user/', 16 | bot: 'https://sci.pe/bot/', 17 | tmp: 'https://sci.pe/tmp/', 18 | seq: 'https://sci.pe/seq/', 19 | service: 'https://sci.pe/service/', 20 | org: 'https://sci.pe/organization/', 21 | workflow: 'https://sci.pe/workflow/', 22 | journal: 'https://sci.pe/periodical/', 23 | graph: 'https://sci.pe/graph/', 24 | release: 'https://sci.pe/release/', 25 | action: 'https://sci.pe/action/', 26 | message: 'https://sci.pe/message/', 27 | email: 'https://sci.pe/email/', 28 | node: 'https://sci.pe/node/', 29 | cnode: 'https://sci.pe/cnode/', 30 | anon: 'https://sci.pe/anon/', 31 | question: 'https://sci.pe/question/', 32 | answer: 'https://sci.pe/answer/', 33 | style: 'https://sci.pe/style/', 34 | styleNode: 'https://sci.pe/styleNode/', 35 | tag: 'https://sci.pe/tag/', 36 | order: 'https://sci.pe/order/', 37 | role: 'https://sci.pe/role/', 38 | audience: 'https://sci.pe/audience/', 39 | issue: 'https://sci.pe/issue/', 40 | audienceRole: 'https://sci.pe/audienceRole/', 41 | arole: 'https://sci.pe/arole/', 42 | srole: 'https://sci.pe/srole/', 43 | vendor: 'https://sci.pe/vendor/', 44 | customer: 'https://sci.pe/customer/', 45 | assigner: 'https://sci.pe/assigner/', 46 | participant: 'https://sci.pe/participant/', 47 | subscriber: 'https://sci.pe/subscriber/', 48 | offer: 'https://sci.pe/offer/', 49 | event: 'https://sci.pe/event/', 50 | scienceai: 'https://sci.pe/', 51 | scipe: 'https://sci.pe/', 52 | ses: 'https://sci.pe/ses/' 53 | }; 54 | -------------------------------------------------------------------------------- /test/test.js: -------------------------------------------------------------------------------- 1 | var sa = require('..'); 2 | var assert = require('assert'); 3 | var prefixes = require('../prefixes'); 4 | 5 | describe('ontology', function() { 6 | it('should be available as a JS object', function() { 7 | assert(sa.defines); 8 | }); 9 | 10 | it('prefixes should be exposed', function() { 11 | assert(prefixes.scienceai); 12 | }); 13 | }); 14 | --------------------------------------------------------------------------------