├── .gitignore ├── 01-basic-bioinfo ├── 01-basic-bioinfo.ipynb ├── README.md └── data │ ├── README.md │ └── il6.ffn ├── 02-multi-omic-data ├── 02-multi-omic-data.ipynb └── README.md ├── 03-community-structure ├── 03-community-structure.ipynb └── README.md ├── 04-community-diversity ├── 04-community-diversity.ipynb └── README.md ├── 05-marker-inference ├── 05-marker-inference.ipynb ├── README.md └── img │ ├── composition.png │ ├── rank-equations1.png │ ├── rank-equations2.png │ └── rank-equations3.png ├── 06-outcome-prediction ├── 06-outcome-prediction.ipynb └── README.md ├── 07-single-cell-omics ├── 07-single-cell-omics.ipynb ├── README.md └── data │ ├── README.md │ ├── brainCIDR.R │ ├── cidr.csv.gz │ ├── ct.csv │ └── tags.csv.gz ├── 08-language-model ├── 08-language-model.ipynb ├── README.md └── data │ ├── bacteriocin.csv │ ├── bagel.fa │ └── pdb_hits.fa ├── LICENSE └── README.md /.gitignore: -------------------------------------------------------------------------------- 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