├── .codecov.yml ├── .github ├── PULL_REQUEST_TEMPLATE.md ├── dependabot.yml └── workflows │ ├── build.yml │ ├── docs.yml │ ├── documentation-links.yml │ ├── lint.yml │ ├── release.yml │ ├── tests-dev.yml │ └── tests.yml ├── .gitignore ├── .readthedocs.yaml ├── CHANGELOG ├── CITATION.cff ├── CODE_OF_CONDUCT.md ├── LICENSE ├── MANIFEST.in ├── README.rst ├── docs ├── requirements.txt └── src │ ├── bibliography.rst │ ├── changelog.rst │ ├── conf.py │ ├── contributing.rst │ ├── getting-started.rst │ ├── index.rst │ ├── installation.rst │ ├── references │ ├── VoronoiFPS-Schematic.pdf │ ├── clustering.rst │ ├── datasets.rst │ ├── decomposition.rst │ ├── index.rst │ ├── linear_models.rst │ ├── metrics.rst │ ├── neighbors.rst │ ├── preprocessing.rst │ ├── selection.rst │ └── utils.rst │ └── tutorials.rst ├── examples ├── README.rst ├── neighbors │ ├── README.rst │ ├── pamm.py │ └── sparse-kde.py ├── pcovc │ ├── KPCovC_Comparison.py │ ├── KPCovC_Hyperparameters.py │ ├── PCovC_Comparison.py │ ├── PCovC_Hyperparameters.py │ └── README.rst ├── pcovr │ ├── PCovR-WHODataset.py │ ├── PCovR.py │ ├── PCovR_Regressors.py │ ├── PCovR_Scaling.py │ └── README.rst ├── reconstruction │ ├── PlotGFRE.py │ ├── PlotLFRE.py │ ├── PlotPointwiseGFRE.py │ └── README.rst ├── regression │ ├── OrthogonalRegressionNonAnalytic.py │ ├── README.rst │ └── Ridge2FoldCVRegularization.py └── selection │ ├── FeatureSelection-WHODataset.py │ ├── FeatureSelection.py │ ├── GCH-ROY.py │ ├── README.rst │ └── Selectors-Pipelines.py ├── pyproject.toml ├── src └── skmatter │ ├── __init__.py │ ├── _selection.py │ ├── clustering │ ├── __init__.py │ └── _quick_shift.py │ ├── datasets │ ├── __init__.py │ ├── _base.py │ ├── data │ │ ├── beran_roy_properties.npz │ │ ├── csd-1000r.npz │ │ ├── degenerate_CH4_manifold.npz │ │ ├── h2o-blyp-piglet.npz │ │ ├── nice_dataset.npz │ │ └── who_dataset.csv │ └── descr │ │ ├── csd-1000r.rst │ │ ├── degenerate_CH4_manifold.rst │ │ ├── h2o-blyp-piglet.rst │ │ ├── nice_dataset.rst │ │ └── who_dataset.rst │ ├── decomposition │ ├── __init__.py │ ├── _kernel_pcovc.py │ ├── _kernel_pcovr.py │ ├── _kpcov.py │ ├── _pcov.py │ ├── _pcovc.py │ └── _pcovr.py │ ├── feature_selection │ ├── __init__.py │ └── _base.py │ ├── linear_model │ ├── __init__.py │ ├── _base.py │ └── _ridge.py │ ├── metrics │ ├── __init__.py │ ├── _pairwise.py │ ├── _prediction_rigidities.py │ └── _reconstruction_measures.py │ ├── model_selection │ ├── __init__.py │ └── _split.py │ ├── neighbors │ ├── __init__.py │ └── _sparsekde.py │ ├── preprocessing │ ├── __init__.py │ └── _data.py │ ├── sample_selection │ ├── __init__.py │ ├── _base.py │ └── _voronoi_fps.py │ └── utils │ ├── __init__.py │ ├── _orthogonalizers.py │ ├── _pcovc_utils.py │ ├── _pcovr_utils.py │ ├── _progress_bar.py │ └── _sparsekde.py ├── tests ├── .gitignore ├── requirements.txt ├── test_check_estimators.py ├── test_clustering.py ├── test_datasets.py ├── test_dch.py ├── test_feature_pcov_cur.py ├── test_feature_pcov_fps.py ├── test_feature_simple_cur.py ├── test_feature_simple_fps.py ├── test_greedy_selector.py ├── test_kernel_normalizer.py ├── test_kernel_pcovc.py ├── test_kernel_pcovr.py ├── test_linear_model.py ├── test_metrics.py ├── test_model_selection.py ├── test_neighbors.py ├── test_orthogonalizers.py ├── test_pcovc.py ├── test_pcovr.py ├── test_pcovr_distances.py ├── test_progress_bar.py ├── test_sample_pcov_cur.py ├── test_sample_pcov_fps.py ├── test_sample_simple_cur.py ├── test_sample_simple_fps.py ├── test_sparse_kernel_centerer.py ├── test_standard_flexible_scaler.py └── test_voronoi_fps.py └── tox.ini /.codecov.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/.codecov.yml -------------------------------------------------------------------------------- /.github/PULL_REQUEST_TEMPLATE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/.github/PULL_REQUEST_TEMPLATE.md -------------------------------------------------------------------------------- /.github/dependabot.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/.github/dependabot.yml -------------------------------------------------------------------------------- /.github/workflows/build.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/.github/workflows/build.yml -------------------------------------------------------------------------------- /.github/workflows/docs.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/.github/workflows/docs.yml -------------------------------------------------------------------------------- /.github/workflows/documentation-links.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/.github/workflows/documentation-links.yml -------------------------------------------------------------------------------- /.github/workflows/lint.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/.github/workflows/lint.yml -------------------------------------------------------------------------------- /.github/workflows/release.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/.github/workflows/release.yml -------------------------------------------------------------------------------- /.github/workflows/tests-dev.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/.github/workflows/tests-dev.yml -------------------------------------------------------------------------------- /.github/workflows/tests.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/.github/workflows/tests.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/.gitignore -------------------------------------------------------------------------------- /.readthedocs.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/.readthedocs.yaml -------------------------------------------------------------------------------- /CHANGELOG: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/CHANGELOG -------------------------------------------------------------------------------- /CITATION.cff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/CITATION.cff -------------------------------------------------------------------------------- /CODE_OF_CONDUCT.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/CODE_OF_CONDUCT.md -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/MANIFEST.in -------------------------------------------------------------------------------- /README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/README.rst -------------------------------------------------------------------------------- /docs/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/docs/requirements.txt -------------------------------------------------------------------------------- /docs/src/bibliography.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/docs/src/bibliography.rst -------------------------------------------------------------------------------- /docs/src/changelog.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/docs/src/changelog.rst -------------------------------------------------------------------------------- /docs/src/conf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/docs/src/conf.py -------------------------------------------------------------------------------- /docs/src/contributing.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/docs/src/contributing.rst -------------------------------------------------------------------------------- /docs/src/getting-started.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/docs/src/getting-started.rst -------------------------------------------------------------------------------- /docs/src/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/docs/src/index.rst -------------------------------------------------------------------------------- /docs/src/installation.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/docs/src/installation.rst -------------------------------------------------------------------------------- /docs/src/references/VoronoiFPS-Schematic.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/docs/src/references/VoronoiFPS-Schematic.pdf -------------------------------------------------------------------------------- /docs/src/references/clustering.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/docs/src/references/clustering.rst -------------------------------------------------------------------------------- /docs/src/references/datasets.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/docs/src/references/datasets.rst -------------------------------------------------------------------------------- /docs/src/references/decomposition.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/docs/src/references/decomposition.rst -------------------------------------------------------------------------------- /docs/src/references/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/docs/src/references/index.rst -------------------------------------------------------------------------------- /docs/src/references/linear_models.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/docs/src/references/linear_models.rst -------------------------------------------------------------------------------- /docs/src/references/metrics.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/docs/src/references/metrics.rst -------------------------------------------------------------------------------- /docs/src/references/neighbors.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/docs/src/references/neighbors.rst -------------------------------------------------------------------------------- /docs/src/references/preprocessing.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/docs/src/references/preprocessing.rst -------------------------------------------------------------------------------- /docs/src/references/selection.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/docs/src/references/selection.rst -------------------------------------------------------------------------------- /docs/src/references/utils.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/docs/src/references/utils.rst -------------------------------------------------------------------------------- /docs/src/tutorials.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/docs/src/tutorials.rst -------------------------------------------------------------------------------- /examples/README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/README.rst -------------------------------------------------------------------------------- /examples/neighbors/README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/neighbors/README.rst -------------------------------------------------------------------------------- /examples/neighbors/pamm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/neighbors/pamm.py -------------------------------------------------------------------------------- /examples/neighbors/sparse-kde.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/neighbors/sparse-kde.py -------------------------------------------------------------------------------- /examples/pcovc/KPCovC_Comparison.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/pcovc/KPCovC_Comparison.py -------------------------------------------------------------------------------- /examples/pcovc/KPCovC_Hyperparameters.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/pcovc/KPCovC_Hyperparameters.py -------------------------------------------------------------------------------- /examples/pcovc/PCovC_Comparison.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/pcovc/PCovC_Comparison.py -------------------------------------------------------------------------------- /examples/pcovc/PCovC_Hyperparameters.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/pcovc/PCovC_Hyperparameters.py -------------------------------------------------------------------------------- /examples/pcovc/README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/pcovc/README.rst -------------------------------------------------------------------------------- /examples/pcovr/PCovR-WHODataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/pcovr/PCovR-WHODataset.py -------------------------------------------------------------------------------- /examples/pcovr/PCovR.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/pcovr/PCovR.py -------------------------------------------------------------------------------- /examples/pcovr/PCovR_Regressors.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/pcovr/PCovR_Regressors.py -------------------------------------------------------------------------------- /examples/pcovr/PCovR_Scaling.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/pcovr/PCovR_Scaling.py -------------------------------------------------------------------------------- /examples/pcovr/README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/pcovr/README.rst -------------------------------------------------------------------------------- /examples/reconstruction/PlotGFRE.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/reconstruction/PlotGFRE.py -------------------------------------------------------------------------------- /examples/reconstruction/PlotLFRE.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/reconstruction/PlotLFRE.py -------------------------------------------------------------------------------- /examples/reconstruction/PlotPointwiseGFRE.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/reconstruction/PlotPointwiseGFRE.py -------------------------------------------------------------------------------- /examples/reconstruction/README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/reconstruction/README.rst -------------------------------------------------------------------------------- /examples/regression/OrthogonalRegressionNonAnalytic.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/regression/OrthogonalRegressionNonAnalytic.py -------------------------------------------------------------------------------- /examples/regression/README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/regression/README.rst -------------------------------------------------------------------------------- /examples/regression/Ridge2FoldCVRegularization.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/regression/Ridge2FoldCVRegularization.py -------------------------------------------------------------------------------- /examples/selection/FeatureSelection-WHODataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/selection/FeatureSelection-WHODataset.py -------------------------------------------------------------------------------- /examples/selection/FeatureSelection.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/selection/FeatureSelection.py -------------------------------------------------------------------------------- /examples/selection/GCH-ROY.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/selection/GCH-ROY.py -------------------------------------------------------------------------------- /examples/selection/README.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/selection/README.rst -------------------------------------------------------------------------------- /examples/selection/Selectors-Pipelines.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/examples/selection/Selectors-Pipelines.py -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/pyproject.toml -------------------------------------------------------------------------------- /src/skmatter/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/__init__.py -------------------------------------------------------------------------------- /src/skmatter/_selection.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/_selection.py -------------------------------------------------------------------------------- /src/skmatter/clustering/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/clustering/__init__.py -------------------------------------------------------------------------------- /src/skmatter/clustering/_quick_shift.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/clustering/_quick_shift.py -------------------------------------------------------------------------------- /src/skmatter/datasets/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/datasets/__init__.py -------------------------------------------------------------------------------- /src/skmatter/datasets/_base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/datasets/_base.py -------------------------------------------------------------------------------- /src/skmatter/datasets/data/beran_roy_properties.npz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/datasets/data/beran_roy_properties.npz -------------------------------------------------------------------------------- /src/skmatter/datasets/data/csd-1000r.npz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/datasets/data/csd-1000r.npz -------------------------------------------------------------------------------- /src/skmatter/datasets/data/degenerate_CH4_manifold.npz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/datasets/data/degenerate_CH4_manifold.npz -------------------------------------------------------------------------------- /src/skmatter/datasets/data/h2o-blyp-piglet.npz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/datasets/data/h2o-blyp-piglet.npz -------------------------------------------------------------------------------- /src/skmatter/datasets/data/nice_dataset.npz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/datasets/data/nice_dataset.npz -------------------------------------------------------------------------------- /src/skmatter/datasets/data/who_dataset.csv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/datasets/data/who_dataset.csv -------------------------------------------------------------------------------- /src/skmatter/datasets/descr/csd-1000r.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/datasets/descr/csd-1000r.rst -------------------------------------------------------------------------------- /src/skmatter/datasets/descr/degenerate_CH4_manifold.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/datasets/descr/degenerate_CH4_manifold.rst -------------------------------------------------------------------------------- /src/skmatter/datasets/descr/h2o-blyp-piglet.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/datasets/descr/h2o-blyp-piglet.rst -------------------------------------------------------------------------------- /src/skmatter/datasets/descr/nice_dataset.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/datasets/descr/nice_dataset.rst -------------------------------------------------------------------------------- /src/skmatter/datasets/descr/who_dataset.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/datasets/descr/who_dataset.rst -------------------------------------------------------------------------------- /src/skmatter/decomposition/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/decomposition/__init__.py -------------------------------------------------------------------------------- /src/skmatter/decomposition/_kernel_pcovc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/decomposition/_kernel_pcovc.py -------------------------------------------------------------------------------- /src/skmatter/decomposition/_kernel_pcovr.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/decomposition/_kernel_pcovr.py -------------------------------------------------------------------------------- /src/skmatter/decomposition/_kpcov.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/decomposition/_kpcov.py -------------------------------------------------------------------------------- /src/skmatter/decomposition/_pcov.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/decomposition/_pcov.py -------------------------------------------------------------------------------- /src/skmatter/decomposition/_pcovc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/decomposition/_pcovc.py -------------------------------------------------------------------------------- /src/skmatter/decomposition/_pcovr.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/decomposition/_pcovr.py -------------------------------------------------------------------------------- /src/skmatter/feature_selection/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/feature_selection/__init__.py -------------------------------------------------------------------------------- /src/skmatter/feature_selection/_base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/feature_selection/_base.py -------------------------------------------------------------------------------- /src/skmatter/linear_model/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/linear_model/__init__.py -------------------------------------------------------------------------------- /src/skmatter/linear_model/_base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/linear_model/_base.py -------------------------------------------------------------------------------- /src/skmatter/linear_model/_ridge.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/linear_model/_ridge.py -------------------------------------------------------------------------------- /src/skmatter/metrics/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/metrics/__init__.py -------------------------------------------------------------------------------- /src/skmatter/metrics/_pairwise.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/metrics/_pairwise.py -------------------------------------------------------------------------------- /src/skmatter/metrics/_prediction_rigidities.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/metrics/_prediction_rigidities.py -------------------------------------------------------------------------------- /src/skmatter/metrics/_reconstruction_measures.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/metrics/_reconstruction_measures.py -------------------------------------------------------------------------------- /src/skmatter/model_selection/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/model_selection/__init__.py -------------------------------------------------------------------------------- /src/skmatter/model_selection/_split.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/model_selection/_split.py -------------------------------------------------------------------------------- /src/skmatter/neighbors/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/neighbors/__init__.py -------------------------------------------------------------------------------- /src/skmatter/neighbors/_sparsekde.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/neighbors/_sparsekde.py -------------------------------------------------------------------------------- /src/skmatter/preprocessing/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/preprocessing/__init__.py -------------------------------------------------------------------------------- /src/skmatter/preprocessing/_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/preprocessing/_data.py -------------------------------------------------------------------------------- /src/skmatter/sample_selection/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/sample_selection/__init__.py -------------------------------------------------------------------------------- /src/skmatter/sample_selection/_base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/sample_selection/_base.py -------------------------------------------------------------------------------- /src/skmatter/sample_selection/_voronoi_fps.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/sample_selection/_voronoi_fps.py -------------------------------------------------------------------------------- /src/skmatter/utils/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/utils/__init__.py -------------------------------------------------------------------------------- /src/skmatter/utils/_orthogonalizers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/utils/_orthogonalizers.py -------------------------------------------------------------------------------- /src/skmatter/utils/_pcovc_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/utils/_pcovc_utils.py -------------------------------------------------------------------------------- /src/skmatter/utils/_pcovr_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/utils/_pcovr_utils.py -------------------------------------------------------------------------------- /src/skmatter/utils/_progress_bar.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/utils/_progress_bar.py -------------------------------------------------------------------------------- /src/skmatter/utils/_sparsekde.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/src/skmatter/utils/_sparsekde.py -------------------------------------------------------------------------------- /tests/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/.gitignore -------------------------------------------------------------------------------- /tests/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/requirements.txt -------------------------------------------------------------------------------- /tests/test_check_estimators.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_check_estimators.py -------------------------------------------------------------------------------- /tests/test_clustering.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_clustering.py -------------------------------------------------------------------------------- /tests/test_datasets.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_datasets.py -------------------------------------------------------------------------------- /tests/test_dch.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_dch.py -------------------------------------------------------------------------------- /tests/test_feature_pcov_cur.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_feature_pcov_cur.py -------------------------------------------------------------------------------- /tests/test_feature_pcov_fps.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_feature_pcov_fps.py -------------------------------------------------------------------------------- /tests/test_feature_simple_cur.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_feature_simple_cur.py -------------------------------------------------------------------------------- /tests/test_feature_simple_fps.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_feature_simple_fps.py -------------------------------------------------------------------------------- /tests/test_greedy_selector.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_greedy_selector.py -------------------------------------------------------------------------------- /tests/test_kernel_normalizer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_kernel_normalizer.py -------------------------------------------------------------------------------- /tests/test_kernel_pcovc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_kernel_pcovc.py -------------------------------------------------------------------------------- /tests/test_kernel_pcovr.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_kernel_pcovr.py -------------------------------------------------------------------------------- /tests/test_linear_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_linear_model.py -------------------------------------------------------------------------------- /tests/test_metrics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_metrics.py -------------------------------------------------------------------------------- /tests/test_model_selection.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_model_selection.py -------------------------------------------------------------------------------- /tests/test_neighbors.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_neighbors.py -------------------------------------------------------------------------------- /tests/test_orthogonalizers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_orthogonalizers.py -------------------------------------------------------------------------------- /tests/test_pcovc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_pcovc.py -------------------------------------------------------------------------------- /tests/test_pcovr.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_pcovr.py -------------------------------------------------------------------------------- /tests/test_pcovr_distances.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_pcovr_distances.py -------------------------------------------------------------------------------- /tests/test_progress_bar.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_progress_bar.py -------------------------------------------------------------------------------- /tests/test_sample_pcov_cur.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_sample_pcov_cur.py -------------------------------------------------------------------------------- /tests/test_sample_pcov_fps.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_sample_pcov_fps.py -------------------------------------------------------------------------------- /tests/test_sample_simple_cur.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_sample_simple_cur.py -------------------------------------------------------------------------------- /tests/test_sample_simple_fps.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_sample_simple_fps.py -------------------------------------------------------------------------------- /tests/test_sparse_kernel_centerer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_sparse_kernel_centerer.py -------------------------------------------------------------------------------- /tests/test_standard_flexible_scaler.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_standard_flexible_scaler.py -------------------------------------------------------------------------------- /tests/test_voronoi_fps.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tests/test_voronoi_fps.py -------------------------------------------------------------------------------- /tox.ini: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scikit-learn-contrib/scikit-matter/HEAD/tox.ini --------------------------------------------------------------------------------