├── .circleci └── config.yml ├── .codespellrc ├── .git-blame-ignore-revs ├── .github ├── dependabot.yml └── workflows │ ├── circleci.yml │ ├── lint.yml │ ├── pages.yml │ └── test.yml ├── .gitignore ├── .mailmap ├── .pre-commit-config.yaml ├── AUTHORS.md ├── CHANGES.md ├── CONTRIBUTING.md ├── LICENSE.md ├── Makefile ├── PRESENTING.txt ├── README.md ├── _config.yml ├── _scripts ├── examples2nb.py ├── post_parser.py ├── process_notebooks.py ├── run_regex.py └── tests │ ├── eg.Rmd │ ├── eg.md │ ├── eg2.Rmd │ ├── eg2.md │ └── test_process.py ├── _toc.yml ├── about.md ├── advanced ├── advanced_numpy │ ├── cpu-cacheline.png │ ├── cpu-cacheline.svg │ ├── data │ ├── examples │ │ ├── Makefile │ │ ├── README.txt │ │ ├── mandel-answer.pyx │ │ ├── mandel.pyx │ │ ├── mandelplot.py │ │ ├── myobject-answer.c │ │ ├── myobject.c │ │ ├── myobject_test.py │ │ ├── pilbuffer-answer.py │ │ ├── pilbuffer.py │ │ ├── plots │ │ │ ├── README.txt │ │ │ └── plot_maskedstats.py │ │ ├── setup.py │ │ ├── setup_myobject.py │ │ ├── stride-diagonals-answer.py │ │ ├── stride-diagonals.py │ │ ├── stride-fakedims.py │ │ ├── test.png │ │ ├── view-colors.py │ │ └── wavreader.py │ ├── index.md │ ├── mandelbrot.png │ ├── test2.png │ └── threefundamental.png ├── advanced_python │ └── index.md ├── debugging │ ├── debug_file.py │ ├── gdbinit │ ├── index.md │ ├── index_error.py │ ├── segfault.py │ ├── to_debug.py │ ├── to_debug_solution.py │ ├── vim_pyflakes.png │ ├── vim_syntastic.png │ └── wiener_filtering.py ├── image_processing │ ├── axis_convention.png │ ├── coins.png │ ├── diamond_kernel.png │ ├── examples │ │ ├── README.txt │ │ ├── plot_GMM.py │ │ ├── plot_face_tv_denoise.py │ │ ├── plot_spectral_clustering.py │ │ └── plot_watershed_segmentation.py │ ├── image_GMM.png │ ├── image_spectral_clustering.png │ ├── index.md │ ├── kernels.png │ ├── morpho_mat.png │ └── scikit_image_logo.png ├── index.md ├── interfacing_with_c │ ├── ctypes │ │ └── cos_module.py │ ├── ctypes_numpy │ │ ├── cos_doubles.c │ │ ├── cos_doubles.h │ │ ├── cos_doubles.py │ │ ├── makefile │ │ ├── test_cos_doubles.png │ │ └── test_cos_doubles.py │ ├── cython │ │ ├── cos_module.pyx │ │ └── setup.py │ ├── cython_numpy │ │ ├── _cos_doubles.pyx │ │ ├── cos_doubles.c │ │ ├── cos_doubles.h │ │ ├── setup.py │ │ ├── test_cos_doubles.png │ │ └── test_cos_doubles.py │ ├── cython_simple │ │ ├── cos_module.pyx │ │ └── setup.py │ ├── interfacing_with_c.md │ ├── numpy_c_api │ │ ├── cos_module_np.c │ │ ├── setup.py │ │ ├── test_cos_module_np.png │ │ └── test_cos_module_np.py │ ├── numpy_shared │ │ ├── cos_doubles.c │ │ ├── cos_doubles.h │ │ ├── test_cos_doubles.png │ │ └── test_cos_doubles.py │ ├── python_c_api │ │ ├── cos_module.c │ │ └── setup.py │ ├── swig │ │ ├── cos_module.c │ │ ├── cos_module.h │ │ ├── cos_module.i │ │ └── setup.py │ └── swig_numpy │ │ ├── cos_doubles.c │ │ ├── cos_doubles.h │ │ ├── cos_doubles.i │ │ ├── numpy.i │ │ ├── setup.py │ │ ├── test_cos_doubles.png │ │ └── test_cos_doubles.py ├── mathematical_optimization │ ├── examples │ │ ├── README.txt │ │ ├── plot_1d_optim.py │ │ ├── plot_compare_optimizers.py │ │ ├── plot_constraints.py │ │ ├── plot_convex.py │ │ ├── plot_curve_fitting.py │ │ ├── plot_gradient_descent.py │ │ ├── plot_noisy.py │ │ ├── plot_non_bounds_constraints.py │ │ └── plot_smooth.py │ ├── helper │ │ ├── compare_optimizers.py │ │ ├── compare_optimizers_py3.pkl │ │ └── cost_functions.py │ ├── index.md │ └── optimization_examples.md ├── optimizing │ ├── demo-prof.png │ ├── demo.py │ ├── demo_opt.py │ ├── ica.py │ └── index.md └── scipy_sparse │ ├── bsr_array.md │ ├── coo_array.md │ ├── csc_array.md │ ├── csr_array.md │ ├── dia_array.md │ ├── dok_array.md │ ├── examples │ ├── README.txt │ ├── direct_solve.py │ ├── lobpcg_sakurai.py │ └── pyamg_with_lobpcg.py │ ├── figures │ ├── graph.png │ ├── graph_g.png │ ├── graph_rcm.png │ └── lobpcg_eigenvalues.png │ ├── introduction.md │ ├── lil_array.md │ ├── other_packages.md │ ├── solvers.md │ └── storage_schemes.md ├── data ├── LICENCE.txt ├── MV_HFV_012.jpg ├── an_array.txt ├── elephant.png ├── moonlanding.png ├── organisms.txt ├── populations.txt ├── species.txt ├── test.wav ├── waveform_1.npy ├── waveform_2.npy └── women_percentage.txt ├── dev_requirements.txt ├── docutils.conf ├── guide ├── examples │ ├── README.txt │ └── plot_simple.py └── index.md ├── images ├── cover-2020.pdf ├── cover-2025.pdf ├── cover-2025.svg ├── cover.pdf ├── favicon.ico ├── icon-archive.svg ├── icon-github.svg ├── icon-pdf.svg ├── logo.pdf ├── logo.png ├── logo.svg ├── logo_small.svg └── no_image.png ├── index.md ├── intro ├── help │ └── help.md ├── index.md ├── intro.md ├── language │ ├── basic_types.md │ ├── control_flow.md │ ├── data.txt │ ├── demo.py │ ├── demo2.py │ ├── exceptions.md │ ├── first_steps.md │ ├── functions.md │ ├── io.md │ ├── my_file.py │ ├── oop.md │ ├── python-logo.png │ ├── python_language.md │ ├── reusing_code.md │ ├── solutions │ │ ├── dir_sort.py │ │ ├── path_site.py │ │ └── test_dir_sort.py │ ├── standard_library.md │ └── test.py ├── matplotlib │ ├── examples │ │ ├── README.txt │ │ ├── exercises │ │ │ ├── README.txt │ │ │ ├── plot_exercise_1.py │ │ │ ├── plot_exercise_10.py │ │ │ ├── plot_exercise_2.py │ │ │ ├── plot_exercise_3.py │ │ │ ├── plot_exercise_4.py │ │ │ ├── plot_exercise_5.py │ │ │ ├── plot_exercise_6.py │ │ │ ├── plot_exercise_7.py │ │ │ ├── plot_exercise_8.py │ │ │ └── plot_exercise_9.py │ │ ├── options │ │ │ ├── README.txt │ │ │ ├── plot_aliased.py │ │ │ ├── plot_alpha.py │ │ │ ├── plot_antialiased.py │ │ │ ├── plot_color.py │ │ │ ├── plot_colormaps.py │ │ │ ├── plot_dash_capstyle.py │ │ │ ├── plot_dash_joinstyle.py │ │ │ ├── plot_linestyles.py │ │ │ ├── plot_linewidth.py │ │ │ ├── plot_markers.py │ │ │ ├── plot_mec.py │ │ │ ├── plot_mew.py │ │ │ ├── plot_mfc.py │ │ │ ├── plot_ms.py │ │ │ ├── plot_solid_capstyle.py │ │ │ ├── plot_solid_joinstyle.py │ │ │ └── plot_ticks.py │ │ ├── plot_axes-2.py │ │ ├── plot_axes.py │ │ ├── plot_bad.py │ │ ├── plot_bar.py │ │ ├── plot_contour.py │ │ ├── plot_good.py │ │ ├── plot_grid.py │ │ ├── plot_gridspec.py │ │ ├── plot_imshow.py │ │ ├── plot_multiplot.py │ │ ├── plot_pie.py │ │ ├── plot_plot3d-2.py │ │ ├── plot_plot3d.py │ │ ├── plot_polar.py │ │ ├── plot_quiver.py │ │ ├── plot_scatter.py │ │ ├── plot_subplot-grid.py │ │ ├── plot_subplot-horizontal.py │ │ ├── plot_subplot-vertical.py │ │ ├── plot_text.py │ │ ├── plot_ugly.py │ │ └── pretty_plots │ │ │ ├── README.txt │ │ │ ├── plot_bar_ext.py │ │ │ ├── plot_boxplot_ext.py │ │ │ ├── plot_contour_ext.py │ │ │ ├── plot_grid_ext.py │ │ │ ├── plot_imshow_ext.py │ │ │ ├── plot_multiplot_ext.py │ │ │ ├── plot_pie_ext.py │ │ │ ├── plot_plot3d_ext.py │ │ │ ├── plot_plot_ext.py │ │ │ ├── plot_polar_ext.py │ │ │ ├── plot_quiver_ext.py │ │ │ ├── plot_scatter_ext.py │ │ │ └── plot_text_ext.py │ ├── index.md │ └── quick_reference_figures.md ├── numpy │ ├── advanced_operations.md │ ├── array_object.md │ ├── data │ ├── elaborate_arrays.md │ ├── examples │ │ ├── README.txt │ │ ├── plot_basic1dplot.py │ │ ├── plot_basic2dplot.py │ │ ├── plot_distances.py │ │ ├── plot_mandelbrot.py │ │ ├── plot_polyfit.py │ │ ├── plot_populations.py │ │ └── plot_randomwalk.py │ ├── exercises.md │ ├── images │ │ ├── cpu-cacheline.png │ │ ├── cpu-cacheline.svg │ │ ├── faces.png │ │ ├── markov-chain.png │ │ ├── markov-chain.svg │ │ ├── numpy_broadcasting.png │ │ ├── numpy_fancy_indexing.png │ │ ├── numpy_indexing.png │ │ ├── numpy_indexing.svg │ │ ├── prime-sieve.png │ │ ├── prime-sieve.svg │ │ ├── random_walk.png │ │ ├── random_walk_schema.png │ │ ├── reductions.png │ │ ├── reductions.svg │ │ ├── route66.png │ │ ├── surf.png │ │ └── threefundamental.png │ ├── index.md │ ├── operations.md │ ├── random_walk.png │ ├── random_walk_schema.png │ └── solutions │ │ ├── 1_0_prime_sieve.py │ │ ├── 2_1_matrix_manipulations.py │ │ ├── 2_2_data_statistics.py │ │ ├── 2_3_crude_integration.py │ │ ├── 2_4_mandelbrot.py │ │ ├── 2_5_markov_chain.py │ │ ├── 2_a_call_fortran.py │ │ └── 2_a_fortran_module.f90 └── scipy │ ├── data │ ├── examples │ ├── README.txt │ ├── plot_2d_minimization.py │ ├── plot_connect_measurements.py │ ├── plot_curve_fit.py │ ├── plot_detrend.py │ ├── plot_fftpack.py │ ├── plot_image_filters.py │ ├── plot_image_transform.py │ ├── plot_interpolation.py │ ├── plot_mathematical_morpho.py │ ├── plot_normal_distribution.py │ ├── plot_optimize_example1.py │ ├── plot_optimize_example2.py │ ├── plot_resample.py │ ├── plot_solve_ivp_damped_spring_mass.py │ ├── plot_solve_ivp_simple.py │ ├── plot_spectrogram.py │ ├── plot_t_test.py │ └── solutions │ │ ├── README.txt │ │ └── plot_curvefit_temperature_data.py │ ├── image_processing │ ├── MV_HFV_012.jpg │ ├── exo_histos.png │ ├── image_processing.md │ ├── morpho_mat.png │ ├── sands.png │ └── three_phases.png │ ├── index.md │ ├── scipy_examples.md │ └── summary-exercises │ ├── README.txt │ ├── answers_image_processing.md │ ├── data │ ├── examples │ ├── README.txt │ ├── max-speeds.npy │ ├── plot_cumulative_wind_speed_prediction.py │ ├── plot_gumbell_wind_speed_prediction.py │ ├── plot_optimize_lidar_complex_data.py │ ├── plot_optimize_lidar_complex_data_fit.py │ ├── plot_optimize_lidar_data.py │ ├── plot_optimize_lidar_data_fit.py │ ├── plot_sprog_annual_maxima.py │ ├── sprog-windspeeds.npy │ ├── waveform_1.npy │ └── waveform_2.npy │ ├── image-processing.md │ ├── optimize-fit.md │ ├── stats-interpolate.md │ └── stats-interpolate_examples.md ├── jl-build-requirements.txt ├── jupytext.toml ├── matplotlibrc ├── misc └── yeahconsole ├── packages ├── index.md ├── scikit-image │ ├── index.md │ └── viewer.png ├── scikit-learn │ ├── examples │ │ ├── README.txt │ │ ├── plot_ML_flow_chart.py │ │ ├── plot_bias_variance.py │ │ ├── plot_california_prediction.py │ │ ├── plot_compare_classifiers.py │ │ ├── plot_digits_simple_classif.py │ │ ├── plot_eigenfaces.py │ │ ├── plot_iris_knn.py │ │ ├── plot_iris_scatter.py │ │ ├── plot_linear_model_cv.py │ │ ├── plot_linear_regression.py │ │ ├── plot_measuring_performance.py │ │ ├── plot_pca.py │ │ ├── plot_polynomial_regression.py │ │ ├── plot_separator.py │ │ ├── plot_svm_non_linear.py │ │ ├── plot_tsne.py │ │ └── plot_variance_linear_regr.py │ ├── images │ │ ├── Virginia_Iris.png │ │ ├── iris_setosa.jpg │ │ ├── iris_versicolor.jpg │ │ ├── iris_virginica.jpg │ │ └── scikit-learn-logo.png │ ├── index.md │ └── index_examples.md ├── statistics │ ├── examples │ │ ├── README.txt │ │ ├── airfares.txt │ │ ├── brain_size.csv │ │ ├── iris.csv │ │ ├── plot_airfare.py │ │ ├── plot_iris_analysis.py │ │ ├── plot_paired_boxplots.py │ │ ├── plot_pandas.py │ │ ├── plot_regression.py │ │ ├── plot_regression_3d.py │ │ ├── plot_wage_data.py │ │ ├── plot_wage_education_gender.py │ │ ├── solutions │ │ │ ├── README.txt │ │ │ └── plot_brain_size.py │ │ └── wages.txt │ ├── index.md │ ├── stats_examples.md │ └── two_sided.png └── sympy.md ├── pyproject.toml ├── pyximages ├── README.md ├── numpy_fancy_indexing.pdf 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