├── .codecov.yaml ├── .cruft.json ├── .editorconfig ├── .github ├── ISSUE_TEMPLATE │ ├── bug_report.yml │ ├── config.yml │ └── feature_request.yml └── workflows │ ├── build.yaml │ ├── release.yaml │ └── test.yaml ├── .gitignore ├── .pre-commit-config.yaml ├── .readthedocs.yaml ├── CHANGELOG.md ├── LICENSE ├── README.md ├── docs ├── Makefile ├── _static │ ├── .gitkeep │ └── css │ │ └── custom.css ├── _templates │ ├── .gitkeep │ └── autosummary │ │ └── class.rst ├── api.md ├── changelog.md ├── conf.py ├── contributing.md ├── extensions │ └── typed_returns.py ├── how-to │ ├── ChIP_seq_genomic_ranges_tutorial.ipynb │ └── index.md ├── index.md ├── notebooks │ └── basic_usage.ipynb ├── references.bib └── references.md ├── pyproject.toml ├── src └── genomic_features │ ├── __init__.py │ ├── _core │ ├── cache.py │ └── filters.py │ ├── ensembl │ ├── __init__.py │ └── ensembldb.py │ └── filters.py └── tests ├── test_basic.py ├── test_columns.py ├── test_filters.py └── 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