├── .editorconfig ├── .flake8 ├── .github └── workflows │ └── test.yml ├── .gitignore ├── .pre-commit-config.yaml ├── LICENSE ├── README.md ├── codecov.yml ├── docs ├── Makefile ├── _static │ └── css │ │ └── custom.css ├── _templates │ ├── autosummary │ │ └── class.rst │ └── class_no_inherited.rst ├── api │ └── index.rst ├── conf.py ├── extensions │ └── typed_returns.py ├── index.rst ├── installation.rst ├── make.bat ├── references.rst └── release_notes │ ├── index.rst │ ├── v0.1.0.rst │ └── v0.1.1.rst ├── mypackage ├── __init__.py ├── _mymodel.py ├── _mymodule.py ├── _mypyromodel.py └── _mypyromodule.py ├── pyproject.toml ├── readthedocs.yml ├── setup.py └── tests ├── __init__.py └── test_skeleton.py /.editorconfig: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/scvi-tools-skeleton/HEAD/.editorconfig -------------------------------------------------------------------------------- /.flake8: 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