├── .bumpversion.cfg ├── .codecov.yaml ├── .cruft.json ├── .editorconfig ├── .flake8 ├── .github ├── ISSUE_TEMPLATE │ ├── bug_report.yml │ ├── config.yml │ └── feature_request.yml └── workflows │ ├── build.yaml │ ├── sync.yaml │ └── test.yaml ├── .gitignore ├── .pre-commit-config.yaml ├── .readthedocs.yaml ├── CHANGELOG.md ├── LICENSE ├── README.md ├── docs ├── Makefile ├── _static │ └── .gitkeep ├── _templates │ ├── .gitkeep │ └── autosummary │ │ └── class.rst ├── api.md ├── changelog.md ├── conf.py ├── contributing.md ├── extensions │ └── typed_returns.py ├── index.md ├── make.bat ├── references.bib ├── references.md └── template_usage.md ├── pyproject.toml ├── src └── simple_scvi │ ├── __init__.py │ ├── _mymodel.py │ ├── _mymodule.py │ ├── _mypyromodel.py │ └── _mypyromodule.py └── tests └── test_basic.py /.bumpversion.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/.bumpversion.cfg -------------------------------------------------------------------------------- /.codecov.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/.codecov.yaml -------------------------------------------------------------------------------- /.cruft.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/.cruft.json -------------------------------------------------------------------------------- /.editorconfig: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/.editorconfig -------------------------------------------------------------------------------- /.flake8: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/.flake8 -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/bug_report.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/.github/ISSUE_TEMPLATE/bug_report.yml -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/.github/ISSUE_TEMPLATE/config.yml -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/feature_request.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/.github/ISSUE_TEMPLATE/feature_request.yml -------------------------------------------------------------------------------- /.github/workflows/build.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/.github/workflows/build.yaml -------------------------------------------------------------------------------- /.github/workflows/sync.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/.github/workflows/sync.yaml -------------------------------------------------------------------------------- /.github/workflows/test.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/.github/workflows/test.yaml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/.gitignore -------------------------------------------------------------------------------- /.pre-commit-config.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/.pre-commit-config.yaml -------------------------------------------------------------------------------- /.readthedocs.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/.readthedocs.yaml -------------------------------------------------------------------------------- /CHANGELOG.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/CHANGELOG.md -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/README.md -------------------------------------------------------------------------------- /docs/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/docs/Makefile -------------------------------------------------------------------------------- /docs/_static/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /docs/_templates/.gitkeep: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /docs/_templates/autosummary/class.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/docs/_templates/autosummary/class.rst -------------------------------------------------------------------------------- /docs/api.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/docs/api.md -------------------------------------------------------------------------------- /docs/changelog.md: -------------------------------------------------------------------------------- 1 | ```{include} ../CHANGELOG.md 2 | 3 | ``` 4 | -------------------------------------------------------------------------------- /docs/conf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/docs/conf.py -------------------------------------------------------------------------------- /docs/contributing.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/docs/contributing.md -------------------------------------------------------------------------------- /docs/extensions/typed_returns.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/docs/extensions/typed_returns.py -------------------------------------------------------------------------------- /docs/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/docs/index.md -------------------------------------------------------------------------------- /docs/make.bat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/docs/make.bat -------------------------------------------------------------------------------- /docs/references.bib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/docs/references.bib -------------------------------------------------------------------------------- /docs/references.md: -------------------------------------------------------------------------------- 1 | # References 2 | 3 | ```{bibliography} 4 | :cited: 5 | ``` 6 | -------------------------------------------------------------------------------- /docs/template_usage.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/docs/template_usage.md -------------------------------------------------------------------------------- /pyproject.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/pyproject.toml -------------------------------------------------------------------------------- /src/simple_scvi/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/src/simple_scvi/__init__.py -------------------------------------------------------------------------------- /src/simple_scvi/_mymodel.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/src/simple_scvi/_mymodel.py -------------------------------------------------------------------------------- /src/simple_scvi/_mymodule.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/src/simple_scvi/_mymodule.py -------------------------------------------------------------------------------- /src/simple_scvi/_mypyromodel.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/src/simple_scvi/_mypyromodel.py -------------------------------------------------------------------------------- /src/simple_scvi/_mypyromodule.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/src/simple_scvi/_mypyromodule.py -------------------------------------------------------------------------------- /tests/test_basic.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/scverse/simple-scvi/HEAD/tests/test_basic.py --------------------------------------------------------------------------------