├── Boolformer_demo.ipynb ├── LICENSE ├── README.md ├── boolformer ├── __init__.py ├── envs │ ├── __init__.py │ ├── encoders.py │ ├── environment.py │ ├── generators.py │ └── simplifiers.py ├── evaluator.py ├── logger.py ├── model │ ├── .ipynb_checkpoints │ │ ├── sklearn_wrapper-checkpoint.py │ │ ├── transformer-checkpoint.py │ │ └── utils_wrapper-checkpoint.py │ ├── __init__.py │ ├── attention.py │ ├── embedders.py │ ├── model_wrapper.py │ └── transformer.py ├── notebook_utils.py ├── optim.py ├── slurm.py ├── trainer.py └── utils.py ├── requirements.txt ├── scripts ├── evaluate_on_grn.py ├── run_noiseless.py └── run_noisy.py ├── setup.cfg ├── setup.py └── train.py /Boolformer_demo.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sdascoli/boolformer/HEAD/Boolformer_demo.ipynb -------------------------------------------------------------------------------- /LICENSE: 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