├── LICENSE ├── README.md ├── assets ├── .gitignore └── fig1.PNG ├── data ├── .gitignore └── Source Data.xlsx └── scripts ├── .gitignore ├── ceograph_training_and_inference.ipynb ├── segmentation_functions.py ├── visualize_cellular_contribution_to_ceograph.ipynb └── visualize_morphology_and_cell-cell_interaction_contribution_to_ceograph.ipynb /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sdw95927/Ceograph/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sdw95927/Ceograph/HEAD/README.md -------------------------------------------------------------------------------- /assets/.gitignore: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /assets/fig1.PNG: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sdw95927/Ceograph/HEAD/assets/fig1.PNG -------------------------------------------------------------------------------- /data/.gitignore: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /data/Source Data.xlsx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sdw95927/Ceograph/HEAD/data/Source Data.xlsx -------------------------------------------------------------------------------- /scripts/.gitignore: -------------------------------------------------------------------------------- 1 | 2 | -------------------------------------------------------------------------------- /scripts/ceograph_training_and_inference.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sdw95927/Ceograph/HEAD/scripts/ceograph_training_and_inference.ipynb -------------------------------------------------------------------------------- /scripts/segmentation_functions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sdw95927/Ceograph/HEAD/scripts/segmentation_functions.py -------------------------------------------------------------------------------- /scripts/visualize_cellular_contribution_to_ceograph.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sdw95927/Ceograph/HEAD/scripts/visualize_cellular_contribution_to_ceograph.ipynb -------------------------------------------------------------------------------- /scripts/visualize_morphology_and_cell-cell_interaction_contribution_to_ceograph.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sdw95927/Ceograph/HEAD/scripts/visualize_morphology_and_cell-cell_interaction_contribution_to_ceograph.ipynb --------------------------------------------------------------------------------