├── .gitignore ├── LICENSE ├── README.md ├── core ├── @MINT │ ├── MINT.m │ ├── fit.m │ └── predict.m ├── estimation │ ├── estimate_states.m │ ├── fit_poisson_interp.m │ ├── maximum_likelihood.m │ └── use_best_interp.m ├── recursion │ ├── generate_mex.m │ └── recursion.m └── utils │ ├── bin_data.m │ ├── ck2ind.m │ ├── get_rate_indices.m │ ├── get_state_indices.m │ ├── get_time_indices.m │ └── ind2ck.m ├── data └── download_data.m ├── run ├── +config │ ├── area2_bump.m │ ├── generic.m │ ├── mc_maze.m │ └── mc_rtt.m ├── run_decoder.m └── utils │ ├── evaluate_and_save.m │ ├── test.m │ └── train.m └── task-related ├── +area2_bump ├── fit_trajectories.m ├── get_trial_data.m └── preprocess_behavior.m ├── +mc_maze ├── fit_trajectories.m ├── get_trial_data.m └── preprocess_behavior.m ├── +mc_rtt ├── fit_trajectories.m ├── get_trial_data.m └── preprocess_behavior.m └── utils ├── gauss_filt.m └── smooth_average.m /.gitignore: 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