├── .gitignore ├── LICENSE ├── README.md ├── colab_notebooks ├── .gitignore ├── ESM_MSA_sequence_generation.ipynb └── Protein_Metrics.ipynb ├── conda_env.yml ├── data ├── .gitignore └── protein_scoring-1.9.zip └── notebooks_for_figures ├── Round2_round3_trees.ipynb ├── SOD_round2_pre-test_analysis.ipynb ├── ablation.ipynb ├── experimentally_tested_sequences_figures.ipynb ├── external_validation.ipynb ├── figs └── .gitignore ├── generated_sequences_figures.ipynb └── helpers.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/seanrjohnson/protein_scoring/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/seanrjohnson/protein_scoring/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: 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