├── .gitignore ├── LICENSE ├── README.md ├── docs ├── phaser_pop_workflow.png └── phaser_workflow.png ├── gtex_v8_analyses ├── README.md └── gtex_v8_tissue_by_gene_imbalance.tar.gz ├── phaser ├── README.md ├── call_read_variant_map.py ├── phaser.py ├── read_variant_map.py └── setup.py ├── phaser_annotate ├── README.md └── phaser_annotate.py ├── phaser_gene_ae ├── README.md └── phaser_gene_ae.py ├── phaser_pop ├── README.md ├── cis_var_example │ ├── Whole_Blood.sample_map.txt │ ├── Whole_Blood.test_pairs.txt │ └── run.sh ├── phaser_cis_var.py └── phaser_expr_matrix.py └── useful_files └── hla_hg19.bed /.gitignore: -------------------------------------------------------------------------------- 1 | .DS_Store 2 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/secastel/phaser/HEAD/LICENSE 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