├── .gitignore ├── README.md ├── RNN-missingval ├── .gitignore ├── .ipynb_checkpoints │ ├── evaluate-checkpoint.ipynb │ ├── pre-process-checkpoint.ipynb │ └── train_gru-d-checkpoint.ipynb ├── GRUD.py ├── __pycache__ │ └── GRUD.cpython-35.pyc ├── evaluate.ipynb ├── outputs │ ├── train_5836240.err │ ├── train_5836240.out │ ├── train_5840331.err │ ├── train_5840331.out │ ├── train_5942844.err │ ├── train_5942844.out │ ├── train_5947149.err │ ├── train_5947149.out │ ├── train_5947174.err │ ├── train_5947174.out │ ├── train_5948628.err │ ├── train_5948628.out │ ├── train_5952157.err │ ├── train_5952157.out │ ├── train_5955738.err │ ├── train_5955738.out │ ├── train_5963705.err │ ├── train_5963705.out │ ├── train_5963767.err │ ├── train_5963767.out │ ├── train_5965522.err │ ├── train_5965522.out │ ├── train_5966431.err │ ├── train_5966431.out │ ├── train_5967971.err │ ├── train_5967971.out │ ├── train_5967995.err │ ├── train_5967995.out │ ├── train_6047708.err │ ├── train_6047708.out │ ├── train_6047718.err │ ├── train_6047718.out │ ├── train_6047719.err │ ├── train_6047719.out │ ├── train_6047726.err │ ├── train_6047726.out │ ├── train_6049898.err │ ├── train_6049898.out │ ├── train_6049899.err │ ├── train_6049899.out │ ├── train_6049902.err │ ├── train_6049902.out │ ├── train_6049903.err │ ├── train_6049903.out │ ├── train_6054139.err │ ├── train_6054139.out │ ├── train_6054140.err │ ├── train_6054140.out │ ├── train_6054141.err │ ├── train_6054141.out │ ├── train_6054142.err │ ├── train_6054142.out │ ├── train_6058794.err │ ├── train_6058794.out │ ├── train_6058795.err │ ├── train_6058795.out │ ├── train_6058797.err │ ├── train_6058797.out │ ├── train_6058798.err │ └── train_6058798.out ├── pre-process.ipynb ├── pre-process.py ├── run-jup-prince.sbatch ├── run_pre_process.sh ├── run_train.sh ├── slurm-5941784.out ├── train.py └── train_gru-d.ipynb ├── data_preprocessing ├── Analyzing_data.ipynb ├── README.md ├── missing_vals_LDS.ipynb ├── missing_vals_baseline.ipynb └── raw_data_split.ipynb ├── models ├── LDS │ ├── LDS_RF.ipynb │ ├── LDS_model_LR.ipynb │ ├── LDS_model_PCA_LR.ipynb │ └── baseline_LDS_other_classifiers.ipynb ├── README.md └── baseline │ ├── baseline_RF.ipynb │ ├── baseline_model_LR.ipynb │ └── baseline_model_PCA_LR.ipynb └── plots ├── LDS ├── pr_SVM_LDS.png ├── roc_SVM_LDS.png ├── roc_pr_LR_LDS.png └── roc_pr_PCA_LR_LDS.png ├── README.md ├── baseline ├── pr_SVM_base.png ├── roc_SVM_base.png ├── roc_pr_LR_base.png ├── roc_pr_PCA_LR_base.png └── stem_plot_LR_base.png └── roc_pr_RNN.png /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sedab/EarlySepsisPrediction/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sedab/EarlySepsisPrediction/HEAD/README.md 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