├── CODEOWNERS ├── Imputation_score.sh ├── LICENSE ├── Phasing_score.sh ├── README.md ├── WGS ├── HG00096_example_WGS_data.bcf.gz ├── HG00096_example_WGS_data.bcf.gz.csi ├── HG00096_example_WGS_data.vcf.gz └── HG00096_example_WGS_data.vcf.gz.tbi ├── bin ├── Simpy.py ├── imputation_accuracy.sh └── rebuild_metrics.py ├── data ├── HG00096_example_chip_data.vcf.gz └── HG00096_example_chip_data.vcf.gz.tbi ├── genetic_map ├── chr20.b38.gmap.gz └── plink.chr20.chr.GRCh38.map ├── images └── pipeline_path.png ├── reference ├── reference_panel_example_3samples.vcf.gz └── reference_panel_example_3samples.vcf.gz.tbi └── software_pha_imp ├── Minimac3 ├── beagle.29May21.d6d.jar ├── bref3.29May21.d6d.jar ├── eagle ├── imp5Converter_1.1.5_static ├── impute5_1.1.5_static ├── minimac4 └── shapeit4.2 /CODEOWNERS: -------------------------------------------------------------------------------- 1 | * @selfdecode/team2 2 | -------------------------------------------------------------------------------- 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