├── Allo ├── .projectignore ├── __init__.py ├── allo ├── allocation.py ├── atac.json ├── atac.weights.h5 ├── dnase.json ├── dnase.weights.h5 ├── mixed.json ├── mixed.weights.h5 ├── narrow.json ├── narrow.weights.h5 └── predictPeak.py ├── LICENSE.txt ├── MANIFEST.in ├── README.md ├── pyproject.toml ├── scripts ├── Mixed_train.ipynb ├── Narrow_train.ipynb ├── cnn_training_example.sh ├── cnn_training_gen.py ├── read_acc.sh ├── sm_prep.sh └── smartmap_compare.sh ├── setup.py ├── testRunPE.sam ├── testRunSE.sam └── testRunSEsplice.sam /Allo/.projectignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/seqcode/allo/HEAD/Allo/.projectignore -------------------------------------------------------------------------------- /Allo/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/seqcode/allo/HEAD/Allo/__init__.py 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