├── .dockerignore ├── .github └── workflows │ ├── build_wheel.yml │ └── test.yml ├── .gitignore ├── AUTHORS ├── CITATION.cff ├── ChangeLog ├── LICENSE ├── MANIFEST.in ├── README.md ├── automated_test.py ├── benchmarks ├── README.md ├── benchmark.py ├── connectomics.npy.ckl.gz ├── kimimaro-execution-time-by-version.png ├── kimimaro-memory-profiles-0.1.0-3.0.0.png ├── kimimaro-multiple-memory-profiles.png ├── kimimaro-peak-memory-usage-by-version.png └── kimimaro.numbers ├── ext └── skeletontricks │ ├── dijkstra_invalidation.hpp │ ├── libdivide.h │ ├── skeletontricks.hpp │ ├── skeletontricks.pyx │ └── unordered_dense.hpp ├── kimimaro ├── __init__.py ├── intake.py ├── post.py ├── sharedmemory.py ├── trace.py └── utility.py ├── kimimaro_512x512x512_benchmark.png ├── kimimaro_cli ├── LICENSE ├── __init__.py └── codecs.py ├── manual_testing ├── crossstreet.png ├── manual_test.py ├── marsattacks.png ├── overlaptest.png ├── trial2.png └── yfork.png ├── manylinux2010.Dockerfile ├── 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