├── +crabsort ├── +analysis │ ├── checkSortedSerial.m │ ├── chunk.m │ ├── measureSNR.m │ ├── readData.m │ └── stack.m ├── +database │ ├── build.m │ ├── cacheTemperature.m │ ├── findExpsWithMissingMetadata.m │ ├── makeRow.m │ └── update.m ├── +leaderboard │ ├── dataTables.css │ ├── make.m │ ├── measure.m │ ├── star.css │ └── template.html ├── @NNdata │ ├── NNdata.m │ ├── addDataFrame.m │ ├── check.m │ └── networkHash.m ├── SNR.m ├── automateAction.m ├── checkConsecutive.m ├── checkMetadata.m ├── checkSorted.m ├── clean.m ├── common.m ├── computePeriods.m ├── consolidate.m ├── consolidate_old.m ├── convert2crabFormat.m ├── convertFile2crabFormat.m ├── findNeuronsInPrefFile.m ├── getDataStatistics.m ├── getRawData.m ├── getTemperature.m ├── mergeAll.m ├── open.m ├── organize.m ├── parseMetadata.m ├── plugins.m ├── postPredictAction.m ├── purgeData.m ├── spikeDetectionParameters.m ├── splitABFFile.m ├── trainGlobalNetwork.m └── version.m ├── +csCluster ├── AllToNeuron.m └── ManualCluster.m ├── +csLoadFile ├── ABF.m ├── CRAB.m ├── MAT.m └── SMR.m ├── +csRedDim ├── AmplitudeShapePCA.m ├── PCA.m ├── Pass.m ├── SpikePeakValue.m └── tSNE.m ├── .gitignore ├── @crabsort ├── Amplitude.m ├── NNaddAllUncertainSpikes.m ├── NNdelete.m ├── NNgenerateTrainingData.m ├── NNgetCurrentAccuracy.m ├── NNintrospect.m ├── NNmake.m ├── NNmakeCheckpointDirs.m ├── NNpredict.m ├── NNshowResult.m ├── NNtimer.m ├── NNtrain.m ├── NNtrainOnParallelWorker.m ├── NNupdateAutoPredict.m ├── activateAddNewNeuronMode.m ├── addToGlobalTrainingData.m ├── affirmSpike.m ├── autoYZoom.m ├── automate.m ├── checkABFFiles.m ├── close.m ├── clusterCallback.m ├── crabsort.m ├── createNewAxes.m ├── destroyAllAxes.m ├── displayStatus.m ├── estimateDelay.m ├── findBestProminence.m ├── findSpikes.m ├── findSpikesInView.m ├── getDataToReduce.m ├── getFileSequence.m ├── getFilesWithSortedSpikesOnChannel.m ├── getLabelledSpikes.m ├── getNeuronsOnThisNerve.m ├── getSnippets.m ├── getSpikesOnThisNerve.m ├── hideChannel.m ├── ignoreBeforeFirstSpike.m ├── ignoreEntireFiles.m ├── ignoreSection.m ├── isIntracellular.m ├── jumpToNextUncertainSpike.m ├── jumpToOutlier.m ├── keyPressCallback.m ├── leftClickCallback.m ├── loadFile.m ├── loadNextUnsortedFile.m ├── loadSDPFromNNdata.m ├── makeFindSpikesGUI.m ├── makeGUI.m ├── makeRaster.m ├── markAllInViewAs.m ├── markAsNoise.m ├── maskUnmask.m ├── modify.m ├── mouseCallback.m ├── pruneSpikes.m ├── purgeUncertainSpikes.m ├── reconstructMaskFromIgnoreSection.m ├── redo.m ├── redrawAxes.m ├── reduceDimensionsCallback.m ├── reloadPreferences.m ├── removeMean.m ├── reset.m ├── resetYLims.m ├── resetZoom.m ├── resize.m ├── rightClickCallback.m ├── runAutomateAction.m ├── run_all_tests.m ├── saveData.m ├── saveSDPToNNdata.m ├── say.m ├── scroll.m ├── shouldAutomateStop.m ├── showFullTrace.m ├── showHideAxes.m ├── showHideChannels.m ├── showSpikeInContext.m ├── showSpikes.m ├── toggleSpikeSign.m ├── uninstall.m ├── update.m ├── updateChannel.m ├── updateControlsOnChannelChange.m ├── updateCursor.m ├── updateISIPlot.m ├── updateSpikePromSlider.m ├── updateYTicks.m ├── zeroSpikes.m ├── zeroSpikesInChannel.m └── zoomCallback.m ├── LICENSE.txt ├── README.md ├── crabsort.sublime-project ├── default.m ├── docs └── how-to-use-sorted-data.md ├── functionSignatures.json ├── helper-scripts └── SMR_convert.s2s └── kapalin.json /+crabsort/+analysis/checkSortedSerial.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/+analysis/checkSortedSerial.m -------------------------------------------------------------------------------- /+crabsort/+analysis/chunk.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/+analysis/chunk.m -------------------------------------------------------------------------------- /+crabsort/+analysis/measureSNR.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/+analysis/measureSNR.m -------------------------------------------------------------------------------- /+crabsort/+analysis/readData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/+analysis/readData.m -------------------------------------------------------------------------------- /+crabsort/+analysis/stack.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/+analysis/stack.m -------------------------------------------------------------------------------- /+crabsort/+database/build.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/+database/build.m -------------------------------------------------------------------------------- /+crabsort/+database/cacheTemperature.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/+database/cacheTemperature.m -------------------------------------------------------------------------------- /+crabsort/+database/findExpsWithMissingMetadata.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/+database/findExpsWithMissingMetadata.m -------------------------------------------------------------------------------- /+crabsort/+database/makeRow.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/+database/makeRow.m -------------------------------------------------------------------------------- /+crabsort/+database/update.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/+database/update.m -------------------------------------------------------------------------------- /+crabsort/+leaderboard/dataTables.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/+leaderboard/dataTables.css -------------------------------------------------------------------------------- /+crabsort/+leaderboard/make.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/+leaderboard/make.m -------------------------------------------------------------------------------- /+crabsort/+leaderboard/measure.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/+leaderboard/measure.m -------------------------------------------------------------------------------- /+crabsort/+leaderboard/star.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/+leaderboard/star.css -------------------------------------------------------------------------------- /+crabsort/+leaderboard/template.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/+leaderboard/template.html -------------------------------------------------------------------------------- /+crabsort/@NNdata/NNdata.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/@NNdata/NNdata.m -------------------------------------------------------------------------------- /+crabsort/@NNdata/addDataFrame.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/@NNdata/addDataFrame.m -------------------------------------------------------------------------------- /+crabsort/@NNdata/check.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/@NNdata/check.m -------------------------------------------------------------------------------- /+crabsort/@NNdata/networkHash.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/@NNdata/networkHash.m -------------------------------------------------------------------------------- /+crabsort/SNR.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/SNR.m -------------------------------------------------------------------------------- /+crabsort/automateAction.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/automateAction.m -------------------------------------------------------------------------------- /+crabsort/checkConsecutive.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/checkConsecutive.m -------------------------------------------------------------------------------- /+crabsort/checkMetadata.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/checkMetadata.m -------------------------------------------------------------------------------- /+crabsort/checkSorted.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/checkSorted.m -------------------------------------------------------------------------------- /+crabsort/clean.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/clean.m -------------------------------------------------------------------------------- /+crabsort/common.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/common.m -------------------------------------------------------------------------------- /+crabsort/computePeriods.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/computePeriods.m -------------------------------------------------------------------------------- /+crabsort/consolidate.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/consolidate.m -------------------------------------------------------------------------------- /+crabsort/consolidate_old.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/consolidate_old.m -------------------------------------------------------------------------------- /+crabsort/convert2crabFormat.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/convert2crabFormat.m -------------------------------------------------------------------------------- /+crabsort/convertFile2crabFormat.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/convertFile2crabFormat.m -------------------------------------------------------------------------------- /+crabsort/findNeuronsInPrefFile.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/findNeuronsInPrefFile.m -------------------------------------------------------------------------------- /+crabsort/getDataStatistics.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/getDataStatistics.m -------------------------------------------------------------------------------- /+crabsort/getRawData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/getRawData.m -------------------------------------------------------------------------------- /+crabsort/getTemperature.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/getTemperature.m -------------------------------------------------------------------------------- /+crabsort/mergeAll.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/mergeAll.m -------------------------------------------------------------------------------- /+crabsort/open.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/open.m -------------------------------------------------------------------------------- /+crabsort/organize.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/organize.m -------------------------------------------------------------------------------- /+crabsort/parseMetadata.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/parseMetadata.m -------------------------------------------------------------------------------- /+crabsort/plugins.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/plugins.m -------------------------------------------------------------------------------- /+crabsort/postPredictAction.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/postPredictAction.m -------------------------------------------------------------------------------- /+crabsort/purgeData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/purgeData.m -------------------------------------------------------------------------------- /+crabsort/spikeDetectionParameters.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/spikeDetectionParameters.m -------------------------------------------------------------------------------- /+crabsort/splitABFFile.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/splitABFFile.m -------------------------------------------------------------------------------- /+crabsort/trainGlobalNetwork.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/trainGlobalNetwork.m -------------------------------------------------------------------------------- /+crabsort/version.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+crabsort/version.m -------------------------------------------------------------------------------- /+csCluster/AllToNeuron.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+csCluster/AllToNeuron.m -------------------------------------------------------------------------------- /+csCluster/ManualCluster.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+csCluster/ManualCluster.m -------------------------------------------------------------------------------- /+csLoadFile/ABF.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+csLoadFile/ABF.m -------------------------------------------------------------------------------- /+csLoadFile/CRAB.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+csLoadFile/CRAB.m -------------------------------------------------------------------------------- /+csLoadFile/MAT.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+csLoadFile/MAT.m -------------------------------------------------------------------------------- /+csLoadFile/SMR.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+csLoadFile/SMR.m -------------------------------------------------------------------------------- /+csRedDim/AmplitudeShapePCA.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+csRedDim/AmplitudeShapePCA.m -------------------------------------------------------------------------------- /+csRedDim/PCA.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+csRedDim/PCA.m -------------------------------------------------------------------------------- /+csRedDim/Pass.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+csRedDim/Pass.m -------------------------------------------------------------------------------- /+csRedDim/SpikePeakValue.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+csRedDim/SpikePeakValue.m -------------------------------------------------------------------------------- /+csRedDim/tSNE.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/+csRedDim/tSNE.m -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/.gitignore -------------------------------------------------------------------------------- /@crabsort/Amplitude.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/Amplitude.m -------------------------------------------------------------------------------- /@crabsort/NNaddAllUncertainSpikes.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/NNaddAllUncertainSpikes.m -------------------------------------------------------------------------------- /@crabsort/NNdelete.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/NNdelete.m -------------------------------------------------------------------------------- /@crabsort/NNgenerateTrainingData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/NNgenerateTrainingData.m -------------------------------------------------------------------------------- /@crabsort/NNgetCurrentAccuracy.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/NNgetCurrentAccuracy.m -------------------------------------------------------------------------------- /@crabsort/NNintrospect.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/NNintrospect.m -------------------------------------------------------------------------------- /@crabsort/NNmake.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/NNmake.m -------------------------------------------------------------------------------- /@crabsort/NNmakeCheckpointDirs.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/NNmakeCheckpointDirs.m -------------------------------------------------------------------------------- /@crabsort/NNpredict.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/NNpredict.m -------------------------------------------------------------------------------- /@crabsort/NNshowResult.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/NNshowResult.m -------------------------------------------------------------------------------- /@crabsort/NNtimer.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/NNtimer.m -------------------------------------------------------------------------------- /@crabsort/NNtrain.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/NNtrain.m -------------------------------------------------------------------------------- /@crabsort/NNtrainOnParallelWorker.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/NNtrainOnParallelWorker.m -------------------------------------------------------------------------------- /@crabsort/NNupdateAutoPredict.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/NNupdateAutoPredict.m -------------------------------------------------------------------------------- /@crabsort/activateAddNewNeuronMode.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/activateAddNewNeuronMode.m -------------------------------------------------------------------------------- /@crabsort/addToGlobalTrainingData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/addToGlobalTrainingData.m -------------------------------------------------------------------------------- /@crabsort/affirmSpike.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/affirmSpike.m -------------------------------------------------------------------------------- /@crabsort/autoYZoom.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/autoYZoom.m -------------------------------------------------------------------------------- /@crabsort/automate.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/automate.m -------------------------------------------------------------------------------- /@crabsort/checkABFFiles.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/checkABFFiles.m -------------------------------------------------------------------------------- /@crabsort/close.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/close.m -------------------------------------------------------------------------------- /@crabsort/clusterCallback.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/clusterCallback.m -------------------------------------------------------------------------------- /@crabsort/crabsort.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/crabsort.m -------------------------------------------------------------------------------- /@crabsort/createNewAxes.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/createNewAxes.m -------------------------------------------------------------------------------- /@crabsort/destroyAllAxes.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/destroyAllAxes.m -------------------------------------------------------------------------------- /@crabsort/displayStatus.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/displayStatus.m -------------------------------------------------------------------------------- /@crabsort/estimateDelay.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/estimateDelay.m -------------------------------------------------------------------------------- /@crabsort/findBestProminence.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/findBestProminence.m -------------------------------------------------------------------------------- /@crabsort/findSpikes.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/findSpikes.m -------------------------------------------------------------------------------- /@crabsort/findSpikesInView.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/findSpikesInView.m -------------------------------------------------------------------------------- /@crabsort/getDataToReduce.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/getDataToReduce.m -------------------------------------------------------------------------------- /@crabsort/getFileSequence.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/getFileSequence.m -------------------------------------------------------------------------------- /@crabsort/getFilesWithSortedSpikesOnChannel.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/getFilesWithSortedSpikesOnChannel.m -------------------------------------------------------------------------------- /@crabsort/getLabelledSpikes.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/getLabelledSpikes.m -------------------------------------------------------------------------------- /@crabsort/getNeuronsOnThisNerve.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/getNeuronsOnThisNerve.m -------------------------------------------------------------------------------- /@crabsort/getSnippets.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/getSnippets.m -------------------------------------------------------------------------------- /@crabsort/getSpikesOnThisNerve.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/getSpikesOnThisNerve.m -------------------------------------------------------------------------------- /@crabsort/hideChannel.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/hideChannel.m -------------------------------------------------------------------------------- /@crabsort/ignoreBeforeFirstSpike.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/ignoreBeforeFirstSpike.m -------------------------------------------------------------------------------- /@crabsort/ignoreEntireFiles.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/ignoreEntireFiles.m -------------------------------------------------------------------------------- /@crabsort/ignoreSection.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/ignoreSection.m -------------------------------------------------------------------------------- /@crabsort/isIntracellular.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/isIntracellular.m -------------------------------------------------------------------------------- /@crabsort/jumpToNextUncertainSpike.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/jumpToNextUncertainSpike.m -------------------------------------------------------------------------------- /@crabsort/jumpToOutlier.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/jumpToOutlier.m -------------------------------------------------------------------------------- /@crabsort/keyPressCallback.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/keyPressCallback.m -------------------------------------------------------------------------------- /@crabsort/leftClickCallback.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/leftClickCallback.m -------------------------------------------------------------------------------- /@crabsort/loadFile.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/loadFile.m -------------------------------------------------------------------------------- /@crabsort/loadNextUnsortedFile.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/loadNextUnsortedFile.m -------------------------------------------------------------------------------- /@crabsort/loadSDPFromNNdata.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/loadSDPFromNNdata.m -------------------------------------------------------------------------------- /@crabsort/makeFindSpikesGUI.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/makeFindSpikesGUI.m -------------------------------------------------------------------------------- /@crabsort/makeGUI.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/makeGUI.m -------------------------------------------------------------------------------- /@crabsort/makeRaster.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/makeRaster.m -------------------------------------------------------------------------------- /@crabsort/markAllInViewAs.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/markAllInViewAs.m -------------------------------------------------------------------------------- /@crabsort/markAsNoise.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/markAsNoise.m -------------------------------------------------------------------------------- /@crabsort/maskUnmask.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/maskUnmask.m -------------------------------------------------------------------------------- /@crabsort/modify.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/modify.m -------------------------------------------------------------------------------- /@crabsort/mouseCallback.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/mouseCallback.m -------------------------------------------------------------------------------- /@crabsort/pruneSpikes.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/pruneSpikes.m -------------------------------------------------------------------------------- /@crabsort/purgeUncertainSpikes.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/purgeUncertainSpikes.m -------------------------------------------------------------------------------- /@crabsort/reconstructMaskFromIgnoreSection.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/reconstructMaskFromIgnoreSection.m -------------------------------------------------------------------------------- /@crabsort/redo.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/redo.m -------------------------------------------------------------------------------- /@crabsort/redrawAxes.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/redrawAxes.m -------------------------------------------------------------------------------- /@crabsort/reduceDimensionsCallback.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/reduceDimensionsCallback.m -------------------------------------------------------------------------------- /@crabsort/reloadPreferences.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/reloadPreferences.m -------------------------------------------------------------------------------- /@crabsort/removeMean.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/removeMean.m -------------------------------------------------------------------------------- /@crabsort/reset.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/reset.m -------------------------------------------------------------------------------- /@crabsort/resetYLims.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/resetYLims.m -------------------------------------------------------------------------------- /@crabsort/resetZoom.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/resetZoom.m -------------------------------------------------------------------------------- /@crabsort/resize.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/resize.m -------------------------------------------------------------------------------- /@crabsort/rightClickCallback.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/rightClickCallback.m -------------------------------------------------------------------------------- /@crabsort/runAutomateAction.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/runAutomateAction.m -------------------------------------------------------------------------------- /@crabsort/run_all_tests.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/run_all_tests.m -------------------------------------------------------------------------------- /@crabsort/saveData.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/saveData.m -------------------------------------------------------------------------------- /@crabsort/saveSDPToNNdata.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/saveSDPToNNdata.m -------------------------------------------------------------------------------- /@crabsort/say.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/say.m -------------------------------------------------------------------------------- /@crabsort/scroll.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/scroll.m -------------------------------------------------------------------------------- /@crabsort/shouldAutomateStop.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/shouldAutomateStop.m -------------------------------------------------------------------------------- /@crabsort/showFullTrace.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/showFullTrace.m -------------------------------------------------------------------------------- /@crabsort/showHideAxes.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/showHideAxes.m -------------------------------------------------------------------------------- /@crabsort/showHideChannels.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/showHideChannels.m -------------------------------------------------------------------------------- /@crabsort/showSpikeInContext.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/showSpikeInContext.m -------------------------------------------------------------------------------- /@crabsort/showSpikes.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/showSpikes.m -------------------------------------------------------------------------------- /@crabsort/toggleSpikeSign.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/toggleSpikeSign.m -------------------------------------------------------------------------------- /@crabsort/uninstall.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/uninstall.m -------------------------------------------------------------------------------- /@crabsort/update.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/update.m -------------------------------------------------------------------------------- /@crabsort/updateChannel.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/updateChannel.m -------------------------------------------------------------------------------- /@crabsort/updateControlsOnChannelChange.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/updateControlsOnChannelChange.m -------------------------------------------------------------------------------- /@crabsort/updateCursor.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/updateCursor.m -------------------------------------------------------------------------------- /@crabsort/updateISIPlot.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/updateISIPlot.m -------------------------------------------------------------------------------- /@crabsort/updateSpikePromSlider.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/updateSpikePromSlider.m -------------------------------------------------------------------------------- /@crabsort/updateYTicks.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/updateYTicks.m -------------------------------------------------------------------------------- /@crabsort/zeroSpikes.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/zeroSpikes.m -------------------------------------------------------------------------------- /@crabsort/zeroSpikesInChannel.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/zeroSpikesInChannel.m -------------------------------------------------------------------------------- /@crabsort/zoomCallback.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/@crabsort/zoomCallback.m -------------------------------------------------------------------------------- /LICENSE.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/LICENSE.txt -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/README.md -------------------------------------------------------------------------------- /crabsort.sublime-project: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/crabsort.sublime-project -------------------------------------------------------------------------------- /default.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/default.m -------------------------------------------------------------------------------- /docs/how-to-use-sorted-data.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/docs/how-to-use-sorted-data.md -------------------------------------------------------------------------------- /functionSignatures.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/functionSignatures.json -------------------------------------------------------------------------------- /helper-scripts/SMR_convert.s2s: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/helper-scripts/SMR_convert.s2s -------------------------------------------------------------------------------- /kapalin.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sg-s/crabsort/HEAD/kapalin.json --------------------------------------------------------------------------------