├── README.md ├── banding_scores ├── calculate_nucleosome_banding_scores.R └── get_insert_size_distribution_per_cell.py ├── clustering └── clustering.R ├── dim_reduction └── dim_reduction.R ├── ldscore_regression ├── gather_score_sumstats_results.py ├── generate_cluster_ldsc_model.py ├── generate_ld_score_annotation_template.py └── ldscore_peaks.py └── specificity └── specificity_calculator.R /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shendurelab/mouse-atac/HEAD/README.md -------------------------------------------------------------------------------- /banding_scores/calculate_nucleosome_banding_scores.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shendurelab/mouse-atac/HEAD/banding_scores/calculate_nucleosome_banding_scores.R -------------------------------------------------------------------------------- /banding_scores/get_insert_size_distribution_per_cell.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shendurelab/mouse-atac/HEAD/banding_scores/get_insert_size_distribution_per_cell.py -------------------------------------------------------------------------------- /clustering/clustering.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shendurelab/mouse-atac/HEAD/clustering/clustering.R -------------------------------------------------------------------------------- /dim_reduction/dim_reduction.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shendurelab/mouse-atac/HEAD/dim_reduction/dim_reduction.R -------------------------------------------------------------------------------- /ldscore_regression/gather_score_sumstats_results.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shendurelab/mouse-atac/HEAD/ldscore_regression/gather_score_sumstats_results.py -------------------------------------------------------------------------------- /ldscore_regression/generate_cluster_ldsc_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shendurelab/mouse-atac/HEAD/ldscore_regression/generate_cluster_ldsc_model.py -------------------------------------------------------------------------------- /ldscore_regression/generate_ld_score_annotation_template.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shendurelab/mouse-atac/HEAD/ldscore_regression/generate_ld_score_annotation_template.py -------------------------------------------------------------------------------- /ldscore_regression/ldscore_peaks.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shendurelab/mouse-atac/HEAD/ldscore_regression/ldscore_peaks.py -------------------------------------------------------------------------------- /specificity/specificity_calculator.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shendurelab/mouse-atac/HEAD/specificity/specificity_calculator.R --------------------------------------------------------------------------------