├── README.md ├── bin ├── cellBC_UMI_corrector.py ├── classify_by_primer.pl ├── exportSeuratProjection.R ├── extractSubMatrix.pl ├── filter.tmap.pl ├── gffcompare ├── importCustomClusterInfo2Seurat.R ├── sam2gff.pl ├── scGene_matrix.pl ├── scIsoform_matrix.pl ├── scMatrix2CellRangerH5.py └── scMatrixTransform.R └── example_data ├── 3M-february-2018.txt.gz ├── example.ccs.bam └── example.filtered_feature_bc_matrix.h5 /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shizhuoxing/scISA-Tools/HEAD/README.md -------------------------------------------------------------------------------- /bin/cellBC_UMI_corrector.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shizhuoxing/scISA-Tools/HEAD/bin/cellBC_UMI_corrector.py -------------------------------------------------------------------------------- /bin/classify_by_primer.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shizhuoxing/scISA-Tools/HEAD/bin/classify_by_primer.pl -------------------------------------------------------------------------------- /bin/exportSeuratProjection.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shizhuoxing/scISA-Tools/HEAD/bin/exportSeuratProjection.R -------------------------------------------------------------------------------- /bin/extractSubMatrix.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shizhuoxing/scISA-Tools/HEAD/bin/extractSubMatrix.pl -------------------------------------------------------------------------------- /bin/filter.tmap.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shizhuoxing/scISA-Tools/HEAD/bin/filter.tmap.pl -------------------------------------------------------------------------------- /bin/gffcompare: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shizhuoxing/scISA-Tools/HEAD/bin/gffcompare -------------------------------------------------------------------------------- /bin/importCustomClusterInfo2Seurat.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shizhuoxing/scISA-Tools/HEAD/bin/importCustomClusterInfo2Seurat.R -------------------------------------------------------------------------------- /bin/sam2gff.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shizhuoxing/scISA-Tools/HEAD/bin/sam2gff.pl -------------------------------------------------------------------------------- /bin/scGene_matrix.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shizhuoxing/scISA-Tools/HEAD/bin/scGene_matrix.pl -------------------------------------------------------------------------------- /bin/scIsoform_matrix.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shizhuoxing/scISA-Tools/HEAD/bin/scIsoform_matrix.pl -------------------------------------------------------------------------------- /bin/scMatrix2CellRangerH5.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shizhuoxing/scISA-Tools/HEAD/bin/scMatrix2CellRangerH5.py -------------------------------------------------------------------------------- /bin/scMatrixTransform.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shizhuoxing/scISA-Tools/HEAD/bin/scMatrixTransform.R -------------------------------------------------------------------------------- /example_data/3M-february-2018.txt.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shizhuoxing/scISA-Tools/HEAD/example_data/3M-february-2018.txt.gz -------------------------------------------------------------------------------- /example_data/example.ccs.bam: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shizhuoxing/scISA-Tools/HEAD/example_data/example.ccs.bam -------------------------------------------------------------------------------- /example_data/example.filtered_feature_bc_matrix.h5: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shizhuoxing/scISA-Tools/HEAD/example_data/example.filtered_feature_bc_matrix.h5 --------------------------------------------------------------------------------