├── .gitattributes ├── .gitignore ├── 3peakSuite.R ├── LICENSE ├── README.md ├── easym6A_local.pl ├── easym6A_slurm.pl ├── easym6A_workflow.png └── testdata ├── configuration.txt ├── input_siControl_chr22.fastq.gz ├── input_siMETTL3_chr22.fastq.gz ├── ip_siControl_chr22.fastq.gz ├── ip_siMETTL3_chr22.fastq.gz └── sampleList.txt /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shunliubio/easym6A/HEAD/.gitattributes -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | 2 | .DS_Store 3 | -------------------------------------------------------------------------------- /3peakSuite.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shunliubio/easym6A/HEAD/3peakSuite.R -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shunliubio/easym6A/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shunliubio/easym6A/HEAD/README.md -------------------------------------------------------------------------------- /easym6A_local.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shunliubio/easym6A/HEAD/easym6A_local.pl -------------------------------------------------------------------------------- /easym6A_slurm.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shunliubio/easym6A/HEAD/easym6A_slurm.pl -------------------------------------------------------------------------------- /easym6A_workflow.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shunliubio/easym6A/HEAD/easym6A_workflow.png -------------------------------------------------------------------------------- /testdata/configuration.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shunliubio/easym6A/HEAD/testdata/configuration.txt -------------------------------------------------------------------------------- /testdata/input_siControl_chr22.fastq.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shunliubio/easym6A/HEAD/testdata/input_siControl_chr22.fastq.gz -------------------------------------------------------------------------------- /testdata/input_siMETTL3_chr22.fastq.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shunliubio/easym6A/HEAD/testdata/input_siMETTL3_chr22.fastq.gz -------------------------------------------------------------------------------- /testdata/ip_siControl_chr22.fastq.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shunliubio/easym6A/HEAD/testdata/ip_siControl_chr22.fastq.gz -------------------------------------------------------------------------------- /testdata/ip_siMETTL3_chr22.fastq.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shunliubio/easym6A/HEAD/testdata/ip_siMETTL3_chr22.fastq.gz -------------------------------------------------------------------------------- /testdata/sampleList.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/shunliubio/easym6A/HEAD/testdata/sampleList.txt --------------------------------------------------------------------------------