├── LICENSE ├── README.md ├── input_data ├── HILIC_pos_diag_basel.txt ├── Shuzhao-ASMS-Fall20181130-Exercises.zip ├── ave_log2_modc_ae_2012.txt ├── mcg_pathwayanalysis_A.tsv ├── mcg_pathwayanalysis_B.tsv ├── modc_ae_2012.txt └── testdata0710.txt └── notebooks ├── All_Exercises_execuable_ASMS2018F.ipynb ├── Averaging_technical_replicates.ipynb ├── Bubble_plot_pathways.ipynb ├── HCL_clustering_considering_retention_time.ipynb ├── Search_list_targets_in_featureTable.ipynb ├── Statistics_group_comparison.ipynb ├── asari2023_Notebook_Composite_mass_tracks.ipynb ├── khipu2023_Numbers_khipu_preannotation.ipynb ├── khipu2023_custom_adduct_isotope_patterns.ipynb ├── khipu2023_data_analysis_ecoli_pos.ipynb ├── khipu2023_data_analysis_yeast_pos.ipynb ├── khipu2023_demo_khipu_algorithms.ipynb ├── khipu2023_demo_khipu_plot.ipynb ├── pcpfm_Bowen2023_analysis.ipynb ├── pcpfm_HZV029_subset_analysis.ipynb └── porting_iroa_annotation.ipynb /LICENSE: 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