├── LICENSE ├── MANIFEST.in ├── README.md ├── bin └── nanospa ├── example ├── fastq │ └── test.fastq └── reference.fa ├── nanospa ├── __init__.py ├── alignment.py ├── data │ ├── model │ │ ├── m6A_models │ │ │ ├── m6A_model_2_0_AGACA │ │ │ │ ├── checkpoint │ │ │ │ ├── cp.ckpt.data-00000-of-00001 │ │ │ │ └── cp.ckpt.index │ │ │ ├── m6A_model_2_0_AGACC │ │ │ │ ├── checkpoint │ │ │ │ ├── cp.ckpt.data-00000-of-00001 │ │ │ │ └── cp.ckpt.index │ │ │ ├── m6A_model_2_0_AGACT │ │ │ │ ├── checkpoint │ │ │ │ ├── cp.ckpt.data-00000-of-00001 │ │ │ │ └── cp.ckpt.index │ │ │ ├── m6A_model_2_0_GGACA │ │ │ │ ├── checkpoint │ │ │ │ ├── cp.ckpt.data-00000-of-00001 │ │ │ │ └── cp.ckpt.index │ │ │ ├── m6A_model_2_0_GGACC │ │ │ │ ├── checkpoint │ │ │ │ ├── cp.ckpt.data-00000-of-00001 │ │ │ │ └── cp.ckpt.index │ │ │ ├── m6A_model_2_0_GGACG │ │ │ │ ├── checkpoint │ │ │ │ ├── cp.ckpt.data-00000-of-00001 │ │ │ │ └── cp.ckpt.index │ │ │ ├── m6A_model_2_0_GGACT │ │ │ │ ├── checkpoint │ │ │ │ ├── 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