├── CHANGE_LOG.txt ├── LICENSE ├── Makefile ├── Options.cpp ├── PREQUAL_manual.pdf ├── README.md ├── Sequence.cpp ├── Sequence.h ├── ZorroInterface.cpp ├── ZorroInterface.h ├── conda.recipe ├── build.sh └── meta.yaml ├── hmm.c ├── hmm.h ├── prequal.cpp └── prequal.h /CHANGE_LOG.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/simonwhelan/prequal/HEAD/CHANGE_LOG.txt -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/simonwhelan/prequal/HEAD/LICENSE -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/simonwhelan/prequal/HEAD/Makefile -------------------------------------------------------------------------------- /Options.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/simonwhelan/prequal/HEAD/Options.cpp -------------------------------------------------------------------------------- /PREQUAL_manual.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/simonwhelan/prequal/HEAD/PREQUAL_manual.pdf -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/simonwhelan/prequal/HEAD/README.md -------------------------------------------------------------------------------- /Sequence.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/simonwhelan/prequal/HEAD/Sequence.cpp -------------------------------------------------------------------------------- /Sequence.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/simonwhelan/prequal/HEAD/Sequence.h -------------------------------------------------------------------------------- /ZorroInterface.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/simonwhelan/prequal/HEAD/ZorroInterface.cpp -------------------------------------------------------------------------------- /ZorroInterface.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/simonwhelan/prequal/HEAD/ZorroInterface.h -------------------------------------------------------------------------------- /conda.recipe/build.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/simonwhelan/prequal/HEAD/conda.recipe/build.sh -------------------------------------------------------------------------------- /conda.recipe/meta.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/simonwhelan/prequal/HEAD/conda.recipe/meta.yaml -------------------------------------------------------------------------------- /hmm.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/simonwhelan/prequal/HEAD/hmm.c -------------------------------------------------------------------------------- /hmm.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/simonwhelan/prequal/HEAD/hmm.h -------------------------------------------------------------------------------- /prequal.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/simonwhelan/prequal/HEAD/prequal.cpp -------------------------------------------------------------------------------- /prequal.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/simonwhelan/prequal/HEAD/prequal.h --------------------------------------------------------------------------------