├── .gitignore ├── .gitmodules ├── CMakeLists.txt ├── LICENSE ├── MANIFEST.in ├── README.md ├── ripserplusplus ├── CMakeLists.txt ├── Ripser_plusplus_Converter.py ├── __init__.py ├── examples │ ├── HIV.distance_matrix │ ├── Vicsek300_300_of_300.distance_matrix │ ├── celegans.distance_matrix │ ├── dragon1000.distance_matrix │ ├── o3_4096.point_cloud │ └── sphere_3_192.distance_matrix.lower_triangular ├── include │ ├── parallel_hashmap │ │ ├── meminfo.h │ │ ├── phmap.h │ │ ├── phmap_base.h │ │ ├── phmap_bits.h │ │ ├── phmap_config.h │ │ ├── phmap_dump.h │ │ ├── phmap_fwd_decl.h │ │ └── phmap_utils.h │ ├── phmap_interface │ │ ├── phmap_interface.cpp │ │ └── phmap_interface.h │ ├── profiling │ │ └── stopwatch.h │ └── sparsehash │ │ ├── dense_hash_map │ │ ├── dense_hash_set │ │ ├── internal │ │ ├── densehashtable.h │ │ ├── hashtable-common.h │ │ ├── libc_allocator_with_realloc.h │ │ └── sparsehashtable.h │ │ ├── sparse_hash_map │ │ ├── sparse_hash_set │ │ ├── sparsetable │ │ └── traits ├── install_simple.sh ├── python_examples │ ├── README.md │ ├── dictionary_test.py │ ├── examples.py │ ├── run_ripser++_w_CLI.py │ ├── run_ripser++_w_matrix.py │ ├── sp_test.sparse_matrix │ ├── sp_tests.py │ ├── sp_verification.py │ └── testmemory.py ├── ripser++.cu └── testing │ ├── ripser++_testing_expected_barcodes │ ├── HIV.gpu.barcodes │ ├── Vicsek300_300_of_300.gpu.barcodes │ ├── celegans.gpu.barcodes │ ├── dragon1000.gpu.barcodes │ ├── o3_4096.gpu.barcodes │ └── sphere_3_192.gpu.barcodes │ ├── run.sh │ ├── shunit2 │ ├── .githooks │ │ ├── generic │ │ └── pre-commit.shellcheck │ ├── .gitignore │ ├── .travis.yml │ ├── CODE_OF_CONDUCT.md │ ├── LICENSE │ ├── README.md │ ├── doc │ │ ├── CHANGES-2.1.md │ │ ├── RELEASE_NOTES-2.1.0.txt │ │ ├── RELEASE_NOTES-2.1.1.txt │ │ ├── RELEASE_NOTES-2.1.2.txt │ │ ├── RELEASE_NOTES-2.1.3.txt │ │ ├── RELEASE_NOTES-2.1.4.txt │ │ ├── RELEASE_NOTES-2.1.5.txt │ │ ├── RELEASE_NOTES-2.1.6.txt │ │ ├── RELEASE_NOTES-2.1.7.md │ │ ├── RELEASE_NOTES-2.1.8.md │ │ ├── TODO.txt │ │ ├── contributors.md │ │ └── design_doc.txt │ ├── examples │ │ ├── equality_test.sh │ │ ├── lineno_test.sh │ │ ├── math.inc │ │ ├── math_test.sh │ │ ├── mkdir_test.sh │ │ ├── mock_file.sh │ │ ├── mock_file_test.sh │ │ ├── party_test.sh │ │ └── suite_test.sh │ ├── init_githooks.sh │ ├── lib │ │ ├── shflags │ │ └── versions │ ├── shunit2 │ ├── shunit2_args_test.sh │ ├── shunit2_asserts_test.sh │ ├── shunit2_failures_test.sh │ ├── shunit2_macros_test.sh │ ├── shunit2_misc_test.sh │ ├── shunit2_standalone_test.sh │ ├── shunit2_test_helpers │ └── test_runner │ └── tests.sh └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/simonzhang00/ripser-plusplus/HEAD/.gitignore -------------------------------------------------------------------------------- /.gitmodules: -------------------------------------------------------------------------------- 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