├── .gitignore ├── LICENSE ├── README.md ├── database ├── Amm.dat ├── ColdChem.dat ├── NorthSea │ ├── Dan.csv │ ├── Halfdan.csv │ ├── Kraka.csv │ ├── README.md │ ├── Valdemar.csv │ ├── average_brine_North_Sea_fields.csv │ └── sofie_north_sea_brine.xlsx ├── README.md ├── Tipping_Hurley.dat ├── core10.dat ├── frezchem.dat ├── iso.dat ├── llnl.dat ├── minteq.dat ├── minteq.v4.dat ├── phreeqc.dat ├── pitzer.dat ├── sit.dat ├── solutions.json ├── surfaces.json └── wateq4f.dat ├── examples ├── IPhreeqc │ ├── CCM.pqi │ ├── IPhreeqc_test.m │ ├── IPhreeqc_test2.m │ ├── IPhreeqc_test2.pqc │ ├── IPhreeqc_test3_SCM.m │ ├── ex2_input.pqc │ ├── ex2_input_mod.pqc │ └── run_phreeqc_string.m ├── PhreeqcMatlabCases │ ├── base_example.mlx │ └── base_example00.m ├── basetest │ ├── Advect_cpp.chem.txt │ ├── Advect_cpp.log.txt │ ├── advect.pqi │ ├── advection_cpp.m │ ├── simple_advect.m │ └── units.pqi ├── batch │ ├── Advect_cpp.chem.txt │ ├── Advect_cpp.log.txt │ ├── ex2.m │ ├── ex2_input.pqc │ ├── ex2_single_cell.m │ ├── ex5.m │ └── ex5_input.pqc ├── benchmarks │ └── benchmark01.m ├── data │ ├── json_sample.json │ └── json_transport_sample.json ├── notebooks │ ├── .ipynb_checkpoints │ │ └── development-ideas-checkpoint.ipynb │ ├── development-ideas.ipynb │ ├── development_codes.m │ └── surface_development.m ├── phreeqc │ ├── ex2 │ ├── ex2.csv │ ├── ex2.out │ ├── ex5 │ ├── ex5.csv │ ├── ex5.out │ ├── phreeqc.dat │ ├── phreeqc.log │ └── run_phreeqc_examples.m └── transport │ ├── chalk_scm.m │ ├── chalk_scm_input.pqc │ ├── chalk_scm_matlab.pqm │ ├── chalk_transport.phr │ ├── chalk_transport.phr.out │ ├── ex11.m │ ├── ex11_input.pqc │ ├── ex11_phreeqc_matlab.pqm │ ├── ex11_simple.m │ ├── ex11_simple_input.pqc │ ├── ex11_simple_phreeqc_matlab.pqm │ ├── ex11adv.sel │ ├── phreeqc.log │ └── simple_ion_exchange.csv ├── libs ├── IPhreeqc.h ├── IrmResult.h ├── PHRQ_base.h ├── PHRQ_exports.h ├── RM_interface_C.h └── Var.h ├── src ├── @Datafile │ └── Datafile.m ├── @Exchange │ └── Exchange.m ├── @Gas │ └── Gas.m ├── @IPhreeqc │ └── IPhreeqc.m ├── @IRM_RESULT │ └── IRM_RESULT.m ├── @Kinetics │ └── Kinetics.m ├── @Phase │ └── Phase.m ├── @PhaseResult │ └── PhaseResult.m ├── @PhreeqcRM │ └── PhreeqcRM.m ├── @SelectedOutput │ └── SelectedOutput.m ├── @SingleCell │ └── SingleCell.m ├── @SingleCellResult │ └── SingleCellResult.m ├── @Solution │ └── Solution.m ├── @SolutionResult │ └── SolutionResult.m ├── @Surface │ └── Surface.m ├── @SurfaceResult │ └── SurfaceResult.m ├── Advection1D │ ├── InitializePhreeqcAdvection.m │ ├── PhreeqcAdvection.m │ ├── ReadAdvectionFile.m │ └── SimpleAdvection1D.m ├── Bulk │ └── PhreeqcSingleCell.m ├── FVTool │ ├── InitializePhreeqcFVTool.m │ └── sample_initialize_fvtool.pqm ├── Tools │ ├── DATABASE_PATH.m │ ├── PhreeqcMatlab_EXAMPLE_PATH.m │ ├── ReadPhreeqcFile.m │ ├── combine_phreeqc_strings.m │ ├── database_file.m │ └── read_json_ex.m ├── Transport1D │ └── PhreeqcTransport1D.m └── classes │ ├── @edl_layer │ └── edl_layer.m │ ├── @exchange_units 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