├── LICENSE ├── README.md ├── merging_and_qc ├── merge_sce.ipynb ├── qc_merged_expts01_to_28_20180604.ipynb ├── qc_merged_expts28to32_34and35_20180606.ipynb ├── qc_merged_expts29_to_39_20180604.ipynb └── qc_merged_expts40_to_45_20180601.ipynb ├── plotting_notebooks ├── differentiation_prediction.ipynb ├── figures_scripts.ipynb ├── lead_switchin.ipynb ├── pca.ipynb ├── pseudotime_stages.ipynb └── stage_comparison.ipynb └── scrnaseq_preprocessing └── Snakefile /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/single-cell-genetics/singlecell_endodiff_paper/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/single-cell-genetics/singlecell_endodiff_paper/HEAD/README.md -------------------------------------------------------------------------------- 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