├── .gitignore ├── Makefile ├── README.md ├── loop.asqg ├── loop.fa ├── loop.fa.fai ├── loop.gfa ├── loop.gv ├── loop.gv.png ├── loop.sam ├── sample.asqg ├── sample.fa ├── sample.fa.fai ├── sample.gfa ├── sample.gv ├── sample.gv.png └── sample.sam /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjackman/assembly-graph/HEAD/.gitignore -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjackman/assembly-graph/HEAD/Makefile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjackman/assembly-graph/HEAD/README.md -------------------------------------------------------------------------------- /loop.asqg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjackman/assembly-graph/HEAD/loop.asqg -------------------------------------------------------------------------------- /loop.fa: -------------------------------------------------------------------------------- 1 | >1 2 | AAA 3 | >2 4 | ACG 5 | >3 6 | CAT 7 | >4 8 | TTT 9 | -------------------------------------------------------------------------------- /loop.fa.fai: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjackman/assembly-graph/HEAD/loop.fa.fai -------------------------------------------------------------------------------- /loop.gfa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjackman/assembly-graph/HEAD/loop.gfa -------------------------------------------------------------------------------- /loop.gv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjackman/assembly-graph/HEAD/loop.gv -------------------------------------------------------------------------------- /loop.gv.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjackman/assembly-graph/HEAD/loop.gv.png -------------------------------------------------------------------------------- /loop.sam: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjackman/assembly-graph/HEAD/loop.sam -------------------------------------------------------------------------------- /sample.asqg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjackman/assembly-graph/HEAD/sample.asqg -------------------------------------------------------------------------------- /sample.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjackman/assembly-graph/HEAD/sample.fa -------------------------------------------------------------------------------- /sample.fa.fai: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjackman/assembly-graph/HEAD/sample.fa.fai -------------------------------------------------------------------------------- /sample.gfa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjackman/assembly-graph/HEAD/sample.gfa -------------------------------------------------------------------------------- /sample.gv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjackman/assembly-graph/HEAD/sample.gv -------------------------------------------------------------------------------- /sample.gv.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjackman/assembly-graph/HEAD/sample.gv.png -------------------------------------------------------------------------------- /sample.sam: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjackman/assembly-graph/HEAD/sample.sam --------------------------------------------------------------------------------