├── README.md ├── covid-a549-analysis.R ├── covid-comparison-analysis.R ├── covid-rna-analysis.R ├── covid-rnaseq ├── covid-rna-analysis.R └── gene_map.csv ├── data.zip ├── example.csv ├── example1.Rmd ├── example2.Rmd ├── week2 ├── test.sh ├── test_arguments.sh └── test_variables.sh ├── week3 ├── get_uniprot_data.sh └── test_loops.sh ├── week4 ├── SraRunTable.txt ├── get_sra_data.sh └── get_sra_robust.sh ├── week5 ├── basic_examples.R ├── fastq_filesizes.txt ├── fastq_sha256.txt └── run_salmon.sh └── week6 └── golub_plotting.R /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjcockell/lockdown-learning/HEAD/README.md -------------------------------------------------------------------------------- /covid-a549-analysis.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjcockell/lockdown-learning/HEAD/covid-a549-analysis.R 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