├── .gitignore ├── README.md ├── SNPFILT.Rproj ├── figures.Rmd ├── filteringbonnet.Rmd ├── filteringdrum.Rmd ├── filteringflounder.Rmd ├── filteringsnapper.Rmd └── scr ├── README.md ├── VCFfilterstats.R ├── ggplot.R ├── libraries.R └── xtrafunctions.R /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjoleary/SNPFILT/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjoleary/SNPFILT/HEAD/README.md -------------------------------------------------------------------------------- /SNPFILT.Rproj: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjoleary/SNPFILT/HEAD/SNPFILT.Rproj -------------------------------------------------------------------------------- /figures.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjoleary/SNPFILT/HEAD/figures.Rmd -------------------------------------------------------------------------------- /filteringbonnet.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjoleary/SNPFILT/HEAD/filteringbonnet.Rmd -------------------------------------------------------------------------------- /filteringdrum.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjoleary/SNPFILT/HEAD/filteringdrum.Rmd -------------------------------------------------------------------------------- /filteringflounder.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjoleary/SNPFILT/HEAD/filteringflounder.Rmd -------------------------------------------------------------------------------- /filteringsnapper.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjoleary/SNPFILT/HEAD/filteringsnapper.Rmd -------------------------------------------------------------------------------- /scr/README.md: -------------------------------------------------------------------------------- 1 | # SFL_PopGen -------------------------------------------------------------------------------- /scr/VCFfilterstats.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjoleary/SNPFILT/HEAD/scr/VCFfilterstats.R -------------------------------------------------------------------------------- /scr/ggplot.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjoleary/SNPFILT/HEAD/scr/ggplot.R -------------------------------------------------------------------------------- /scr/libraries.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjoleary/SNPFILT/HEAD/scr/libraries.R -------------------------------------------------------------------------------- /scr/xtrafunctions.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sjoleary/SNPFILT/HEAD/scr/xtrafunctions.R --------------------------------------------------------------------------------