├── .coveragerc ├── .editorconfig ├── .github ├── ISSUE_TEMPLATE.md ├── PULL_REQUEST_TEMPLATE.md └── workflows │ ├── ci_checks.yml │ ├── release.yml │ └── wheels_build.yml ├── .gitignore ├── .readthedocs.yaml ├── .vscode └── settings.json ├── AUTHORS.rst ├── CONTRIBUTING.rst ├── HISTORY.rst ├── LICENSE ├── MANIFEST.in ├── Makefile ├── README.rst ├── docs ├── Makefile ├── _static │ └── css │ │ └── custom.css ├── authors.rst ├── conf.py ├── contributing.rst ├── first_steps.rst ├── genindex.rst ├── glossary.rst ├── history.rst ├── index.rst ├── make.bat ├── readme.rst ├── reference │ ├── classification.rst │ ├── clustering.rst │ ├── data.rst │ ├── embedding.rst │ ├── gnn.rst │ ├── hierarchy.rst │ ├── linalg.rst │ ├── linkpred.rst │ ├── path.rst │ ├── ranking.rst │ ├── regression.rst │ ├── topology.rst │ ├── utils.rst │ └── visualization.rst ├── tutorials │ ├── classification │ │ ├── diffusion.ipynb │ │ ├── index.rst │ │ ├── knn.ipynb │ │ ├── metrics.ipynb │ │ ├── pagerank.ipynb │ │ └── propagation.ipynb │ ├── clustering │ │ ├── index.rst │ │ ├── kcenters.ipynb │ │ ├── leiden.ipynb │ │ ├── louvain.ipynb │ │ └── propagation.ipynb │ ├── data │ │ ├── adult-income.csv │ │ ├── index.rst │ │ ├── iris.p │ │ ├── load_collection.ipynb │ │ ├── load_data.ipynb │ │ ├── miserables.graphml │ │ ├── miserables.tsv │ │ ├── models.ipynb │ │ ├── movie_actor.tsv │ │ ├── mygraph │ │ │ └── names.npy │ │ ├── painters.graphml │ │ ├── painters.tsv │ │ ├── save.ipynb │ │ └── toy_graphs.ipynb │ ├── embedding │ │ ├── forceatlas.ipynb │ │ ├── gsvd.ipynb │ │ ├── index.rst │ │ ├── louvain_embedding.ipynb │ │ ├── pca.ipynb │ │ ├── random_projection.ipynb │ │ ├── spectral.ipynb │ │ ├── spring.ipynb │ │ └── svd.ipynb │ ├── gnn │ │ ├── gnn_classifier.ipynb │ │ └── index.rst │ ├── hierarchy │ │ ├── index.rst │ │ ├── louvain_iteration.ipynb │ │ ├── louvain_recursion.ipynb │ │ └── paris.ipynb │ ├── linkpred │ │ ├── index.rst │ │ └── nn.ipynb │ ├── overview │ │ ├── get_started.ipynb │ │ ├── index.rst │ │ ├── miserables.tsv │ │ └── movie_actor.tsv │ ├── path │ │ ├── distance.ipynb │ │ ├── index.rst │ │ └── shortest_path.ipynb │ ├── ranking │ │ ├── index.rst │ │ ├── katz.ipynb │ │ └── pagerank.ipynb │ ├── regression │ │ ├── diffusion.ipynb │ │ ├── dirichlet.ipynb │ │ └── index.rst │ ├── topology │ │ ├── cliques.ipynb │ │ ├── connected_components.ipynb │ │ ├── core_decomposition.ipynb │ │ ├── cycles.ipynb │ │ ├── index.rst │ │ └── isomorphism.ipynb │ └── visualization │ │ ├── dendrogram_karate_club.svg │ │ ├── dendrograms.ipynb │ │ ├── graphs.ipynb │ │ ├── index.rst │ │ ├── karate_club.svg │ │ ├── paths.ipynb │ │ └── pie_charts.ipynb └── use_cases │ ├── atp.csv │ ├── miserables-en.txt │ ├── recommendation.ipynb │ ├── sport.ipynb │ ├── text.ipynb │ ├── votes.ipynb │ └── wikipedia.ipynb ├── images ├── logo_sknetwork.png ├── logo_sknetwork.xml └── logo_sknetwork_long.png ├── make.bat ├── miserables.tsv ├── movie_actor.tsv ├── pyproject.toml ├── requirements_dev.txt ├── setup.cfg ├── setup.py └── sknetwork ├── __init__.py ├── base.py ├── classification ├── __init__.py ├── base.py ├── base_rank.py ├── diffusion.py ├── knn.py ├── metrics.py ├── pagerank.py ├── propagation.py ├── tests │ ├── __init__.py │ ├── test_API.py │ ├── test_diffusion.py │ ├── test_knn.py │ ├── test_metrics.py │ ├── test_pagerank.py │ └── test_propagation.py └── vote.pyx ├── clustering ├── __init__.py ├── base.py ├── kcenters.py ├── leiden.py ├── leiden_core.pyx ├── louvain.py ├── louvain_core.pyx ├── metrics.py ├── postprocess.py ├── propagation_clustering.py └── tests │ ├── __init__.py │ ├── test_API.py │ ├── test_kcenters.py │ ├── test_leiden.py │ ├── test_louvain.py │ ├── test_metrics.py │ └── test_postprocess.py ├── data ├── __init__.py ├── base.py ├── load.py ├── models.py ├── parse.py ├── test_graphs.py ├── tests │ ├── __init__.py │ ├── test_API.py │ ├── test_base.py │ ├── test_load.py │ ├── test_models.py │ ├── test_parse.py │ ├── test_test_graphs.py │ └── test_toy_graphs.py ├── timeout.py └── toy_graphs.py ├── embedding ├── __init__.py ├── base.py ├── force_atlas.py ├── louvain_embedding.py ├── random_projection.py ├── spectral.py ├── spring.py ├── svd.py └── tests │ ├── __init__.py │ ├── test_API.py │ ├── test_force_atlas.py │ ├── test_louvain_embedding.py │ ├── test_random_projection.py │ ├── test_spectral.py │ ├── test_spring.py │ └── test_svd.py ├── gnn ├── __init__.py ├── activation.py ├── base.py ├── base_activation.py ├── base_layer.py ├── gnn_classifier.py ├── layer.py ├── loss.py ├── neighbor_sampler.py ├── optimizer.py ├── tests │ ├── __init__.py │ ├── test_activation.py │ ├── test_base.py │ ├── test_base_layer.py │ ├── test_gnn_classifier.py │ ├── test_layers.py │ ├── test_loss.py │ ├── test_neigh_sampler.py │ ├── test_optimizer.py │ └── test_utils.py └── utils.py ├── hierarchy ├── __init__.py ├── base.py ├── louvain_hierarchy.py ├── metrics.py ├── paris.pyx ├── postprocess.py └── tests │ ├── __init__.py │ ├── test_API.py │ ├── test_algos.py │ ├── test_metrics.py │ └── test_postprocess.py ├── linalg ├── __init__.py ├── basics.py ├── diteration.pyx ├── eig_solver.py ├── laplacian.py ├── normalizer.py ├── operators.py ├── polynome.py ├── ppr_solver.py ├── push.pyx ├── sparse_lowrank.py ├── svd_solver.py └── tests │ ├── __init__.py │ ├── test_eig.py │ ├── test_laplacian.py │ ├── test_normalization.py │ ├── test_operators.py │ ├── test_polynome.py │ ├── test_ppr.py │ ├── test_sparse_lowrank.py │ └── test_svd.py ├── linkpred ├── __init__.py ├── base.py ├── nn.py └── tests │ ├── __init__.py │ └── test_nn.py ├── log.py ├── path ├── __init__.py ├── dag.py ├── distances.py ├── search.py ├── shortest_path.py └── tests │ ├── __init__.py │ ├── test_dag.py │ ├── test_distances.py │ ├── test_search.py │ └── test_shortest_path.py ├── ranking ├── __init__.py ├── base.py ├── betweenness.pyx ├── closeness.py ├── hits.py ├── katz.py ├── pagerank.py ├── postprocess.py └── tests │ ├── __init__.py │ ├── test_API.py │ ├── test_betweenness.py │ ├── test_closeness.py │ ├── test_hits.py │ ├── test_pagerank.py │ └── test_postprocess.py ├── regression ├── __init__.py ├── base.py ├── diffusion.py └── tests │ ├── __init__.py │ ├── test_API.py │ └── test_diffusion.py ├── sknetwork.py ├── test_base.py ├── test_log.py ├── topology ├── __init__.py ├── cliques.pyx ├── core.pyx ├── cycles.py ├── minheap.pxd ├── minheap.pyx ├── structure.py ├── tests │ ├── __init__.py │ ├── test_cliques.py │ ├── test_core.py │ ├── test_cycles.py │ ├── test_structure.py │ ├── test_triangles.py │ └── test_wl.py ├── triangles.pyx ├── weisfeiler_lehman.py └── weisfeiler_lehman_core.pyx ├── utils ├── __init__.py ├── check.py ├── format.py ├── membership.py ├── neighbors.py ├── tests │ ├── __init__.py │ ├── test_check.py │ ├── test_format.py │ ├── test_membership.py │ ├── test_neighbors.py │ ├── test_tfidf.py │ └── test_values.py ├── tfidf.py └── values.py └── visualization ├── __init__.py ├── colors.py ├── dendrograms.py ├── graphs.py └── tests ├── __init__.py ├── test_dendrograms.py 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