├── .github └── workflows │ └── main.yml ├── LICENSE ├── README.md ├── colors.ttl ├── colors_with_hierarchy.ttl ├── config.yaml └── scripts └── validate-skos /.github/workflows/main.yml: -------------------------------------------------------------------------------- 1 | name: Build /public and deploy to gh-pages with docker container 2 | 3 | on: 4 | push: 5 | workflow_dispatch: 6 | inputs: 7 | logLevel: 8 | description: 'Log level' 9 | required: true 10 | default: 'warning' 11 | tags: 12 | description: 'Test scenario tags' 13 | 14 | jobs: 15 | all-ttl-files: 16 | runs-on: ubuntu-latest 17 | outputs: 18 | matrix: ${{ steps.set-matrix.outputs.file-list }} 19 | steps: 20 | - name: Checkout repository 21 | uses: actions/checkout@v2 22 | 23 | - name: Find TTL files 24 | id: find-ttl 25 | run: | 26 | ttl_files=$(find . -name '*.ttl' -printf '"%p",' | sed 's/,$//') 27 | echo "ttl_files=$ttl_files" 28 | echo "ttl_files=$ttl_files" >> "$GITHUB_ENV" 29 | 30 | - name: Set matrix for TTL files 31 | id: set-matrix 32 | run: echo "file-list=[${ttl_files}]" >> $GITHUB_OUTPUT 33 | 34 | - name: List all changed files 35 | run: echo "${ttl_files}" 36 | 37 | changedfiles: 38 | runs-on: ubuntu-latest 39 | outputs: 40 | ttl: ${{ steps.set-ttl-matrix.outputs.ttl }} 41 | yml: ${{ steps.set-yml-matrix.outputs.yml }} 42 | steps: 43 | - uses: actions/checkout@v3 44 | with: 45 | fetch-depth: 2 46 | - name: Get changed ttl-files 47 | id: changed-ttl-files 48 | uses: tj-actions/changed-files@v42 49 | with: 50 | files: | 51 | **/*.ttl 52 | json: true 53 | 54 | - name: Get changed yml-files 55 | id: changed-yml-files 56 | uses: tj-actions/changed-files@v42 57 | with: 58 | files: | 59 | **/*.yml 60 | **/*.yaml 61 | json: true 62 | 63 | - name: Set turtle file matrix 64 | id: set-ttl-matrix 65 | run: echo "ttl=${{ steps.changed-ttl-files.outputs.all_changed_files }}" >> $GITHUB_OUTPUT 66 | 67 | - name: Set yml file matrix 68 | id: set-yml-matrix 69 | run: echo "yml=${{ steps.changed-yml-files.outputs.all_changed_files }}" >> $GITHUB_OUTPUT 70 | 71 | prepare-matrix: 72 | runs-on: ubuntu-latest 73 | needs: [changedfiles, all-ttl-files] 74 | outputs: 75 | matrix: ${{ steps.set-matrix.outputs.matrix }} 76 | steps: 77 | - name: Determine matrix 78 | id: set-matrix 79 | run: | 80 | changed_files_ttl=${{ toJSON(needs.changedfiles.outputs.ttl) }} 81 | changed_files_yml=${{ toJSON(needs.changedfiles.outputs.yml) }} 82 | 83 | if [ $(echo "$changed_files_ttl" | jq length) -gt 0 ]; then 84 | echo "matrix=${{ toJSON(needs.changedfiles.outputs.ttl) }}" >> $GITHUB_OUTPUT 85 | elif [ $(echo "$changed_files_yml" | jq length) -gt 0 ]; then 86 | echo "matrix=${{ toJSON(needs.all-ttl-files.outputs.matrix) }}" >> $GITHUB_OUTPUT 87 | else 88 | echo "matrix=[]" >> $GITHUB_OUTPUT 89 | fi 90 | 91 | build: 92 | runs-on: ubuntu-latest 93 | needs: [prepare-matrix] 94 | if: ${{ needs.prepare-matrix.outputs.matrix != '[]'}} 95 | steps: 96 | - name: Checkout 🛎️ 97 | uses: actions/checkout@v2 # If you're using actions/checkout@v2 you must set persist-credentials to false in most cases for the deployment to work correctly. 98 | with: 99 | persist-credentials: false 100 | 101 | - name: remove public and data-dir if already exists 102 | run: rm -rf public data 103 | 104 | - run: mkdir public 105 | 106 | - run: chmod -R 777 public # user in container is node which won't have write access to public 107 | 108 | - run: mkdir data 109 | 110 | - run: chmod -R 777 data # user in container is node which won't have write access to public 111 | 112 | - run: git clone https://github.com/$GITHUB_REPOSITORY.git data/ 113 | 114 | - name: make .env file 115 | run: | 116 | input=$GITHUB_REPOSITORY 117 | repo=${input#*/} 118 | echo "BASEURL=/$repo" > .env 119 | 120 | - name: build public dir with docker image 121 | run: > 122 | docker run 123 | -v $(pwd)/public:/app/public 124 | -v $(pwd)/data:/app/data 125 | -v $(pwd)/.env:/app/.env 126 | -v $(pwd)/config.yaml:/app/config.yaml 127 | -e GATSBY_RESPOSITORY_URL=https://github.com/$GITHUB_REPOSITORY 128 | skohub/skohub-vocabs-docker:latest 129 | 130 | - name: Deploy 131 | uses: peaceiris/actions-gh-pages@v3 132 | with: 133 | github_token: ${{ secrets.GITHUB_TOKEN }} 134 | publish_dir: ./public 135 | 136 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | Apache License 2 | Version 2.0, January 2004 3 | http://www.apache.org/licenses/ 4 | 5 | TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION 6 | 7 | 1. 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We also recommend that a 185 | file or class name and description of purpose be included on the 186 | same "printed page" as the copyright notice for easier 187 | identification within third-party archives. 188 | 189 | Copyright [yyyy] [name of copyright owner] 190 | 191 | Licensed under the Apache License, Version 2.0 (the "License"); 192 | you may not use this file except in compliance with the License. 193 | You may obtain a copy of the License at 194 | 195 | http://www.apache.org/licenses/LICENSE-2.0 196 | 197 | Unless required by applicable law or agreed to in writing, software 198 | distributed under the License is distributed on an "AS IS" BASIS, 199 | WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 200 | See the License for the specific language governing permissions and 201 | limitations under the License. 202 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | # SkoHub Pages 2 | 3 | This is an example repository (formerly named `skohub-docker-vocabs`) to show how you can publish your SKOS vocabulary using GitHub infrastructure (Actions and Pages). 4 | 5 | Every time a change is made to a vocabulary a GitHub-workflow-action is triggered to publish the most recent vocabulary to the `gh-pages`-branch, which is used by GitHub pages. 6 | It spins up a Docker container made from [SkoHub Vocabs](https://github.com/hbz/skohub-vocabs). 7 | 8 | ## Usage 9 | 10 | If you want to reuse this repo and have your vocabulary automatically pushed und published via GitHub-Pages, follow these steps: 11 | 12 | 1. Fork this repo. **Uncheck the box to only fork the main branch**. 13 | 1. Go to "Actions" tab and if not already activated, activate GitHub Actions. 14 | 1. Go to "Settings", navigate to the "Pages" setting and select `gh-pages` as the branch your site is being built from. 15 | 1. Go back to the main page of your repo and click the little gear icon in the top right of the "About" section. Check the box at "Use your GitHub Pages website". 16 | 1. Add a commit to the main branch and your vocabulary will be automatically published (sometimes it takes a little to see the changes, remember to do some hard refreshing). 17 | 18 | Any issues? Please open up a issue [here](https://github.com/skohub-io/skohub-pages/issues) 19 | 20 | ## Custom Domain 21 | 22 | If you want to host your vocabularies under your GitHub pages domain (so no W3 perma-id or purl.org redirect), you have to provide that domain in the [`config.yaml`](./config.yaml). 23 | 24 | Example: 25 | 26 | Your GitHub Pages domain is: `https://skohub-io.github.io/skohub-pages/` 27 | Then provide `https://skohub-io.github.io/skohub-pages/` as `custom_domain` in your `config.yaml`. 28 | 29 | The base of your concept scheme could then be something like: `https://skohub-io.github.io/skohub-pages/colours/` 30 | 31 | Notice that this will apply to all your hosted vocabularies. 32 | 33 | ## Troubleshooting 34 | 35 | ### There is no `gh-pages` branch to select for GitHub Pages 36 | 37 | You probably only forked the main branch. 38 | You have two options: 39 | 40 | - Delete the repo and fork it again, but make sure to uncheck the box to only fork the main branch 41 | - Make sure the GitHub Action is activated ➡️ Go to "Actions" tab and activate it. After that commit changes to a vocabulary in the main branch. This should trigger the build and create a `gh-pages` branch. 42 | 43 | ### I push changes, but they seem to have no effect. My vocabulary stays the same 44 | 45 | Maybe your GitHub Action is not activated yet. 46 | Go to the "Actions" tab and activate GitHub Actions for your repository. 47 | 48 | ### During the build I get an error saying `The requested URL returned error: 403` 49 | 50 | You maybe need to update permissions like described here: https://github.com/peaceiris/actions-gh-pages/issues/744 51 | Go to `Settings` > `Actions` > `General` > `Workflow permissions` and toggle the Read and write permissions. 52 | 53 | ## CHANGELOG 54 | 55 | 09.02.2021: 56 | 57 | - In an earlier version, there was the .env variable `PATH_PREFIX` set to point to the repository the vocabulary is hosted at. To align with rest of code, this was changed to `BASEURL`. 58 | - The docker image now also support i18n 59 | 60 | -------------------------------------------------------------------------------- /colors.ttl: -------------------------------------------------------------------------------- 1 | @prefix colour: . 2 | @prefix dct: . 3 | @prefix skos: . 4 | @prefix xsd: . 5 | 6 | colour: a skos:ConceptScheme ; 7 | dct:title "Colour Vocabulary"@en, "Farbvokabular"@de ; 8 | dct:creator "Hans Dampf"@de ; 9 | dct:created "2021-11-02"^^xsd:date ; 10 | dct:license ; 11 | skos:hasTopConcept colour:violet, colour:blue . 12 | 13 | colour:violet a skos:Concept ; 14 | skos:prefLabel "Violett"@de, "violet"@en; 15 | skos:altLabel "Lila"@de, "purple"@en ; 16 | skos:topConceptOf colour: . 17 | 18 | colour:blue a skos:Concept ; 19 | skos:prefLabel "Blau"@de, "blue"@en ; 20 | skos:topConceptOf colour: . 21 | -------------------------------------------------------------------------------- /colors_with_hierarchy.ttl: -------------------------------------------------------------------------------- 1 | @prefix colour: . 2 | @prefix dct: . 3 | @prefix skos: . 4 | @prefix xsd: . 5 | 6 | colour: a skos:ConceptScheme ; 7 | dct:title "Colour vocabulary with hierarchy"@en, "Farbvokabular mit Hierarchie"@de ; 8 | dct:creator "Hans Dampf"@de ; 9 | dct:created "2021-11-02"^^xsd:date ; 10 | dct:license ; 11 | skos:hasTopConcept colour:violet, colour:green . 12 | 13 | colour:violet a skos:Concept ; 14 | skos:prefLabel "Violett"@de, "violet"@en ; 15 | skos:altLabel "Lila"@de, "purple"@en ; 16 | skos:topConceptOf colour: . 17 | 18 | colour:green a skos:Concept ; 19 | skos:prefLabel "green"@en, "Grün"@de ; 20 | skos:narrower colour:grassgreen ; 21 | skos:topConceptOf colour: . 22 | 23 | colour:grassgreen a skos:Concept ; 24 | skos:prefLabel "grass-green"@en, "Grasgrün"@de ; 25 | skos:inScheme colour: . 26 | -------------------------------------------------------------------------------- /config.yaml: -------------------------------------------------------------------------------- 1 | --- 2 | # see https://github.com/nextapps-de/flexsearch#tokenizer-prefix-search for options 3 | tokenizer: "full" # strict, forward, reverse, full 4 | custom_domain: "" 5 | fail_on_validation: false 6 | searchableAttributes: 7 | - "prefLabel" # you should not delete this one 8 | - "notation" 9 | - "altLabel" 10 | - "hiddenLabel" 11 | - "example" 12 | - "definition" 13 | ui: 14 | title: "SkoHub Vocabs" # Title is mandatory 15 | logo: "skohub-signet-color.svg" # Path 16 | colors: 17 | skoHubWhite: "rgb(255, 255, 255)" 18 | skoHubDarkColor: "rgb(15, 85, 75)" 19 | skoHubMiddleColor: "rgb(20, 150, 140)" 20 | skoHubLightColor: "rgb(40, 200, 175)" 21 | skoHubThinColor: "rgb(55, 250, 210)" 22 | skoHubBlackColor: "rgb(5, 30, 30)" 23 | skoHubAction: "rgb(230, 0, 125)" 24 | skoHubNotice: "rgb(250, 180, 50)" 25 | skoHubDarkGrey: "rgb(155, 155, 155)" 26 | skoHubMiddleGrey: "rgb(200, 200, 200)" 27 | skoHubLightGrey: "rgb(235, 235, 235)" 28 | fonts: 29 | regular: 30 | font_family: "Ubuntu" 31 | font_style: "normal" 32 | font_weight: 400 33 | name: "ubuntu-v20-latin-regular" 34 | bold: 35 | font_family: "Ubuntu" 36 | font_style: "normal" 37 | font_weight: 700 38 | name: "ubuntu-v20-latin-700" 39 | 40 | -------------------------------------------------------------------------------- /scripts/validate-skos: -------------------------------------------------------------------------------- 1 | #!/bin/bash 2 | set -euo pipefail 3 | 4 | scripts=$(realpath $(dirname -- "$0")) 5 | shape=$(realpath "$scripts/../skos.shacl.ttl") 6 | severity=all 7 | report= 8 | 9 | usage() { 10 | echo "$0 [OPTION]... FILE" 11 | echo "Validate SKOS file (Turtle syntax). No return message means everything is fine." 12 | echo 13 | echo "Options:" 14 | echo " -s FILE shape file (default: $shape)" 15 | echo " -l LEVEL severity violation|warning|all (default: $severity)" 16 | echo " -o FILE keep full validation report in this file" 17 | echo " -r show raw validation report and exit" 18 | echo " -h show this help message" 19 | exit $1 20 | } 21 | 22 | die() { 23 | echo "$*" >&2 24 | exit 1 25 | } 26 | 27 | cleanup() { 28 | echo "Cleaning up" 29 | docker container stop validate-skos-fuseki > /dev/null 30 | } 31 | 32 | trap cleanup 0 2 3 15 33 | 34 | while getopts s:l:o:rh flag 35 | do 36 | case "${flag}" in 37 | s) shape=${OPTARG};; 38 | l) severity=${OPTARG};; 39 | o) result=${OPTARG};; 40 | r) report=1;; 41 | h) usage 0;; 42 | *) usage 1;; 43 | esac 44 | done 45 | shift $(($OPTIND - 1)) 46 | 47 | [ -z "${1:-}" ] && usage 1 48 | 49 | file=$(realpath "$1") 50 | [ -f "$file" ] || die "File not found: $file" 51 | # create temporary testfile and make sure it gets deleted 52 | testfile=$(mktemp /tmp/validate-script.XXXXXX) 53 | 54 | 55 | shape=$(realpath "$shape") 56 | [ -f "$shape" ] || die "File not found: $shape" 57 | # add the skos definitions to the file if the shape is "skos.shacl.ttl" 58 | if [ "$(basename $shape)" = "skos.shacl.ttl" ]; then 59 | cat $file $(realpath skosClassAndPropertyDefinitions.ttl) > $testfile 60 | else 61 | cat $file > $testfile 62 | fi 63 | 64 | grep -vE '^\s*(#.*)?$' "$file" >/dev/null || die "File contains no RDF statements: $testfile" 65 | 66 | if [[ $severity == "warning" ]]; then 67 | SEVERITY_FILE="./scripts/checkForWarning.rq" 68 | elif [[ $severity == "all" ]]; then 69 | SEVERITY_FILE="./scripts/checkForBoth.rq" 70 | elif [[ $severity == "violation" ]]; then 71 | SEVERITY_FILE="./scripts/checkForViolation.rq" 72 | else 73 | die "Unknown severity: $severity" 74 | fi 75 | 76 | # create temporary file (will be deleted in cleanup function) 77 | if [[ -z "${result:-}" ]]; then 78 | result=$(mktemp /tmp/validate-script.XXXXXX) 79 | else 80 | result=$(realpath "$result") 81 | fi 82 | 83 | # Check if the container is running 84 | if docker ps | grep -q "validate-skos-fuseki"; then 85 | docker stop validate-skos-fuseki 86 | sleep 1 87 | fi 88 | 89 | # wait till fuseki is up 90 | max_attempts=5 91 | delay=3 92 | attempt=1 93 | 94 | echo "Starting validation container" 95 | 96 | while [ $attempt -le $max_attempts ]; do 97 | # start fuseki 98 | docker run -d --rm --name validate-skos-fuseki -p 0:3030 -v $(pwd)/fuseki/config_inference.ttl:/fuseki/config_inference.ttl skohub/jena-fuseki:latest /jena-fuseki/fuseki-server --config /fuseki/config_inference.ttl > /dev/null 99 | port=$(docker port validate-skos-fuseki 3030/tcp | head -1 | awk -F: '{print $2}') 100 | sleep $delay 101 | curl "http://localhost:$port/$/ping" > /dev/null && break 102 | attempt=$((attempt + 1)) 103 | done 104 | 105 | if [ $attempt -gt $max_attempts ]; then 106 | echo "The command has failed after $max_attempts attempts." 107 | exit 1 108 | fi 109 | 110 | # validate ttl file 111 | riotResult="$(docker run --rm -v $testfile:/rdf/testfile.ttl skohub/jena:4.6.1 riot --validate /rdf/testfile.ttl)" 112 | echo $? 113 | 114 | # upload file 115 | curl --request POST \ 116 | --url "http://localhost:$port/dataset/data?graph=default" \ 117 | --header 'Content-Type: text/turtle' \ 118 | --data-binary @$testfile > /dev/null 119 | 120 | # validate w/ shacl 121 | curl --request POST \ 122 | --url "http://localhost:$port/dataset/shacl?graph=default" \ 123 | --header 'Content-Type: text/turtle' \ 124 | --data-binary @$shape > "$result" 125 | 126 | echo "Checking validation result" 127 | 128 | if [[ "$report" -eq 1 ]]; then 129 | cat "$result" 130 | else 131 | validationResult="$(docker run --rm -v $(pwd)/scripts/checkForViolation.rq:/rdf/checkForViolation.rq -v $result:/rdf/result.ttl skohub/jena:4.6.1 arq --data /rdf/result.ttl --query /rdf/checkForViolation.rq)" 132 | 133 | lines=$(echo "$validationResult" | wc -l ) 134 | 135 | # Correct validation has 4 lines of output 136 | [[ ${lines} -eq 4 ]] || die "$validationResult" 137 | 138 | fi 139 | --------------------------------------------------------------------------------