├── .gitmodules ├── README.md ├── SizeFasta.class ├── SizeFasta.java ├── SubFasta$Position.class ├── SubFasta.class ├── SubFasta.java ├── Utils$FastaReader.class ├── Utils$FastaRecord.class ├── Utils$Pair.class ├── Utils$ToProtein.class ├── Utils$Translate.class ├── Utils.class ├── Utils.java ├── classify.py ├── classifyReads.sh ├── convertFastqToFastaAndQual.class ├── convertFastqToFastaAndQual.java ├── example └── example.sh ├── input.fofn └── update ├── _classify_read.sh ├── _classify_submit.sh ├── _count_mers.sh ├── _meryl_build.sh ├── _meryl_diff.sh ├── _meryl_filt.sh ├── _meryl_mrg.sh ├── _meryl_submit.sh ├── fastaExtractFromList.jar ├── kmerHistToPloidyDepth.jar └── readme.md /.gitmodules: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/skoren/triobinningScripts/HEAD/.gitmodules -------------------------------------------------------------------------------- /README.md: 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