├── FeatureExtractor ├── LM4Feature.py ├── README.md └── __init__.py ├── GNN ├── GNN.py ├── GNN_Link.py ├── GNN_Link_MRR.py ├── GraphFormer │ ├── NodeFormer.py │ ├── __init__.py │ ├── data_utils.py │ ├── dataset.py │ ├── eval.py │ ├── logger.py │ ├── model │ │ ├── __init__.py │ │ ├── gnns.py │ │ └── nodeformer.py │ └── parse.py ├── Link_Prediction.py ├── MLP.py ├── MoNet.py ├── Node2Vec.py ├── RevGAT │ ├── __init__.py │ ├── eff_gcn_modules │ │ ├── __init__.py │ │ └── rev │ │ │ ├── __init__.py │ │ │ ├── gcn_revop.py │ │ │ ├── memgcn.py │ │ │ └── rev_layer.py │ └── model.py ├── __init__.py ├── model │ ├── Dataloader.py │ ├── GNN_arg.py │ ├── GNN_library.py │ ├── __init__.py │ └── utils.py └── readme.md ├── LLM.png ├── LMs ├── Bert │ ├── __init__.py │ └── config.py ├── Deberta │ ├── __init__.py │ └── config.py ├── Distilbert │ ├── __init__.py │ └── config.py ├── ERNIE │ ├── __init__.py │ └── config.py ├── Electra │ ├── __init__.py │ └── config.py ├── GPT │ ├── __init__.py │ └── config.py ├── LinkBert │ ├── __init__.py │ └── config.py ├── Model │ ├── Bert │ │ ├── __init__.py │ │ └── config.py │ ├── BertforMLMCL.py │ ├── Deberta │ │ ├── __init__.py │ │ └── config.py │ ├── Distilbert │ │ ├── __init__.py │ │ └── config.py │ ├── ERNIE │ │ ├── __init__.py │ │ └── config.py │ ├── Electra │ │ ├── __init__.py │ │ └── config.py │ ├── GPT │ │ ├── __init__.py │ │ └── config.py │ ├── LinkBert │ │ ├── __init__.py │ │ └── config.py │ ├── Link_Model.py │ └── __init__.py ├── RoBerta │ ├── __init__.py │ └── config.py ├── TNP_trainer.py ├── Train_Command │ ├── Co-Train.py │ ├── Inference │ │ ├── TMLM_TCL_TDK.sh │ │ ├── __init__.py │ │ ├── deepwalk.py │ │ └── ogb-arxiv.sh │ ├── Pretrain │ │ ├── DATA │ │ │ ├── Children_DT │ │ │ │ ├── 3T.sh │ │ │ │ ├── Bert-large.sh │ │ │ │ ├── Bert.sh │ │ │ │ ├── Deberta-large.sh │ │ │ │ ├── Deberta.sh │ │ │ │ ├── Distilbert.sh │ │ │ │ ├── Electra-large.sh │ │ │ │ ├── Electra.sh │ │ │ │ └── TMLM.sh │ │ │ ├── CitationV8 │ │ │ │ └── TCL.sh │ │ │ ├── Computers │ │ │ │ ├── Base.sh │ │ │ │ └── pretrain.sh │ │ │ ├── Cornell │ │ │ │ ├── Base.sh │ │ │ │ └── pretrain.sh │ │ │ ├── GoodReads │ │ │ │ └── TLink.sh │ │ │ ├── History │ │ │ │ ├── Bert.sh │ │ │ │ └── TMLM.sh │ │ │ ├── Photo_RS │ │ │ │ ├── Bert-large.sh │ │ │ │ ├── Bert.sh │ │ │ │ ├── Deberta-large.sh │ │ │ │ ├── Deberta.sh │ │ │ │ ├── Distilbert.sh │ │ │ │ ├── Electra-base.sh │ │ │ │ ├── Electra-large.sh │ │ │ │ ├── Electra.sh │ │ │ │ ├── RoBerta.sh │ │ │ │ ├── Roberta-large.sh │ │ │ │ ├── TMLM-TCL-TDK.sh │ │ │ │ ├── TMLM.sh │ │ │ │ └── TinyBert.sh │ │ │ ├── Sports │ │ │ │ └── Pre.sh │ │ │ └── arxiv_TA │ │ │ │ ├── Pretrain.sh │ │ │ │ ├── TMLM-TCL-TDK.sh │ │ │ │ └── TMLM.sh │ │ ├── MLM │ │ │ └── mlm.sh │ │ ├── TCL │ │ │ └── TCL.sh │ │ ├── TDeepWalk │ │ │ ├── Deepwalk.sh │ │ │ ├── Tinybert.py │ │ │ └── __init__.py │ │ └── __init__.py │ ├── __init__.py │ ├── inference_LM.py │ ├── train_CL.py │ ├── train_CL_DK.py │ ├── train_DPK.py │ ├── train_MLM_CL.py │ ├── train_TLink.py │ └── train_TRP.py ├── Trainer │ ├── CLF_trainer.py │ ├── Co_Trainer.py │ ├── Inf_trainer.py │ ├── MLM_TCL_trainer.py │ ├── TCL_DK_trainer.py │ ├── TCL_trainer.py │ ├── TDK_trainer.py │ ├── TLink_trainer.py │ ├── TRP_trainer.py │ └── __init__.py ├── __init__.py ├── debug_model.py ├── lm_trainer.py ├── lm_utils.py ├── model.py ├── private │ ├── __init__.py │ └── exp_settings.py ├── temp │ └── TinyBert │ │ ├── ckpts │ │ └── Cornell_TEST │ │ │ └── seed0Cornell_TEST_TinyBert_lr0.002_bsz36_wd0.01_do0.1_atdo0.1_cla_do0.1_cla_biasT_e3_we0.2_ef50000_lsf0.1__modeNone │ │ │ ├── config.json │ │ │ └── pytorch_model.bin │ │ └── finetune │ │ └── Cornell_TEST │ │ └── seed0Cornell_TEST_TinyBert_lr0.002_bsz36_wd0.01_do0.1_atdo0.1_cla_do0.1_cla_biasT_e3_we0.2_ef50000_lsf0.1__modeNone │ │ ├── TinyBert.ckpt │ │ └── TinyBert.result ├── trainLM.py ├── train_CLM.py ├── train_MLM.py ├── train_TNP.py └── utils │ ├── __init__.py │ ├── data │ ├── Amazon │ │ ├── Amazon_data.py │ │ └── __init__.py │ ├── DBLP │ │ ├── DBLP_data.py │ │ └── __init__.py │ ├── OGB │ │ ├── __init__.py │ │ └── arxiv.py │ ├── WebKB │ │ ├── WebKB_data.py │ │ └── __init__.py │ ├── __init__.py │ ├── data_augmentation.py │ ├── data_preprocess.py │ ├── data_statics.py │ ├── datasets.py │ └── preprocess.py │ ├── function │ ├── __init__.py │ ├── dgl_utils.py │ ├── hf_accuracy.py │ ├── hf_f1.py │ ├── hf_pearsonr.py │ ├── hf_precision.py │ ├── hf_recall.py │ ├── hf_spearmanr.py │ ├── np_utils.py │ ├── os_utils.py │ ├── save_preds.py │ └── test_save │ │ └── emb.npy │ ├── misc │ ├── __init__.py │ └── analyze_emb.py │ ├── modules │ ├── __init__.py │ ├── conf_utils.py │ └── logger.py │ └── settings.py ├── README.md ├── Visualize ├── TSNE.py └── __init__.py ├── data └── webkb │ ├── Cornell │ ├── Cornell.csv │ ├── Cornell.pt │ ├── Cornell.txt │ └── deepwalk_feat.npy │ ├── Texas │ ├── Texas.csv │ ├── Texas.pt │ └── Texas.txt │ ├── Washington │ ├── Washington.csv │ ├── Washington.pt │ └── Washington.txt │ └── Wisconsin │ ├── Wisconsin.csv 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