├── .gitignore ├── .travis.yml ├── book ├── Makefile ├── README ├── a_evolution │ ├── differential_evolution.tex │ ├── evolution_strategies.tex │ ├── evolutionary_programming.tex │ ├── gene_expression_programming.tex │ ├── genetic_algorithm.tex │ ├── genetic_programming.tex │ ├── grammatical_evolution.tex │ ├── learning_classifier_system.tex │ ├── nsga.tex │ └── spea.tex ├── a_immune │ ├── airs.tex │ ├── clonal_selection_algorithm.tex │ ├── dca.tex │ ├── immune_network_algorithm.tex │ └── negative_selection_algorithm.tex ├── a_neural │ ├── backpropagation.tex │ ├── hopfield_network.tex │ ├── lvq.tex │ ├── perceptron.tex │ └── som.tex ├── a_physical │ ├── cultural_algorithm.tex │ ├── extremal_optimization.tex │ ├── harmony_search.tex │ ├── memetic_algorithm.tex │ └── simulated_annealing.tex ├── a_probabilistic │ ├── boa.tex │ ├── compact_genetic_algorithm.tex │ ├── cross_entropy.tex │ ├── pbil.tex │ └── umda.tex ├── a_stochastic │ ├── adaptive_random_search.tex │ ├── grasp.tex │ ├── guided_local_search.tex │ ├── hill_climbing_search.tex │ ├── iterated_local_search.tex │ ├── random_search.tex │ ├── reactive_tabu_search.tex │ ├── scatter_search.tex │ ├── tabu_search.tex │ └── variable_neighborhood_search.tex ├── a_swarm │ ├── ant_colony_system.tex │ ├── ant_system.tex │ ├── bees_algorithm.tex │ ├── bfoa.tex │ └── pso.tex ├── a_template.tex ├── b_appendix1.tex ├── b_errata.tex ├── c_advanced.tex ├── c_advanced │ ├── new_algorithms.tex │ ├── paradigms.tex │ ├── problem_solving.tex │ ├── racing_algorithms.tex │ ├── testing_algorithms.tex │ └── visualizing_algorithms.tex ├── c_evolution.tex ├── c_immune.tex ├── c_introduction.tex ├── c_neural.tex ├── c_physical.tex ├── c_probabilistic.tex ├── c_stochastic.tex ├── c_swarm.tex ├── definitions.tex ├── f_acknowledgments.tex ├── f_copyright.tex ├── f_foreword.tex ├── f_preface.tex ├── f_title_page.tex ├── f_toc.tex ├── graphics │ ├── basin1.tex │ ├── basin2.tex │ ├── ga1.tex │ ├── ga2.tex │ ├── ga3.tex │ ├── pso1.pdf │ ├── tsp1.tex │ ├── tsp2.tex │ └── tsp3.tex ├── make_bibtex.sh ├── paperback.tex └── styles │ ├── algorithm2e.sty │ └── bibunits.sty ├── deprecated ├── README ├── v0.1 │ ├── ACO │ │ ├── .cvsignore │ │ ├── ACO.tex │ │ ├── AntColonySystems.tex │ │ └── AntSystems.tex │ ├── AIS │ │ ├── AIS.tex │ │ ├── ClonalSelectionAlgorithm.tex │ │ └── NegativeSelection.tex │ ├── Appendices │ │ ├── .cvsignore │ │ └── PseudoCode.tex │ ├── Background │ │ ├── .cvsignore │ │ └── Background.tex │ ├── Bibliography │ │ ├── .cvsignore │ │ └── Bibliography.tex │ ├── EC │ │ ├── DifferentialEvolution.tex │ │ ├── EC.tex │ │ └── GeneticAlgorithm.tex │ ├── Header │ │ ├── .cvsignore │ │ ├── Copyright.tex │ │ ├── TOC.tex │ │ └── Title.tex │ ├── Insights │ │ ├── .cvsignore │ │ └── Insights.tex │ ├── PSO │ │ ├── PSO.tex │ │ └── ParticleSwarmOptimisation.tex │ ├── definitions.tex │ └── document.tex ├── v0.2 │ ├── bitstringutils.rb │ ├── book_about.txt │ ├── book_algorithm_selection.rb │ ├── book_field.txt │ ├── book_ga_survey.txt │ ├── book_goal.txt │ ├── book_motivation.txt │ ├── book_problems.txt │ ├── book_toc.txt │ ├── cellulargeneticalgorithm_code.rb │ ├── cellulargeneticalgorithm_overview.txt │ ├── cellulargeneticalgorithm_tutorial.txt │ ├── collectionutils.rb │ ├── crowdinggeneticalgorithm_code.rb │ ├── crowdinggeneticalgorithm_overview.txt │ ├── crowdinggeneticalgorithm_tutorial.txt │ ├── differentialevolution_code.rb │ ├── differentialevolution_overview.txt │ ├── differentialevolution_tutorial.txt │ ├── evolutionprogramming_code.rb │ ├── evolutionprogramming_overview.txt │ ├── evolutionprogramming_tutorial.txt │ ├── evolutionstrategies_code.rb │ ├── evolutionstrategies_overview.txt │ ├── evolutionstrategies_tutorial.txt │ ├── geneexpressionprogramming_code.rb │ ├── geneexpressionprogramming_overview.txt │ ├── geneexpressionprogramming_tutorial.txt │ ├── geneticalgorithm_code.rb │ ├── geneticalgorithm_overview.txt │ ├── geneticalgorithm_tutorial.txt │ ├── geneticprogramming_code.rb │ ├── geneticprogramming_overview.txt │ ├── geneticprogramming_tutorial.txt │ ├── grammaticalevolution_code.rb │ ├── grammaticalevolution_overview.txt │ ├── grammaticalevolution_tutorial.txt │ ├── introduction_background.txt │ ├── introduction_field.txt │ ├── islandgeneticalgorithm_code.rb │ ├── islandgeneticalgorithm_overview.txt │ ├── islandgeneticalgorithm_tutorial.txt │ ├── randomsearch.rb │ └── utils.rb ├── v0.3 │ ├── algorithm2e.sty │ ├── bibentry.sty │ ├── bibliography.bib │ ├── c_advanced.tex │ ├── c_evolution.tex │ ├── c_immune.tex │ ├── c_introduction.tex │ ├── c_neural.tex │ ├── c_physical.tex │ ├── c_probabilistic.tex │ ├── c_stochastic.tex │ ├── c_swarm.tex │ ├── copyright.tex │ ├── definitions.tex │ ├── evolution │ │ ├── evolutionstrategies.tex │ │ ├── geneticalgorithm.tex │ │ └── geneticprogramming.tex │ ├── master.tex │ ├── preface.tex │ ├── project │ │ ├── book format.txt │ │ └── plan.txt │ ├── stochastic │ │ ├── localizedrandomsearch.tex │ │ ├── multiplerestart.tex │ │ ├── numbers.tex │ │ └── randomsearch.tex │ └── upquote.sty ├── v0.4 │ ├── posts │ │ └── README │ └── src │ │ ├── AdaptiveRandomSearch.rb │ │ ├── GRASP.rb │ │ ├── IteratedLocalSearch.rb │ │ ├── LocalizedRandomSearch.rb │ │ ├── MultipleRestartSearch.rb │ │ ├── RandomSearch.rb │ │ ├── StochasticDiffusionSearch.rb │ │ └── TabuSearch.rb ├── v0.5 │ ├── algorithm2e.sty │ ├── bibentry.sty │ ├── bibliography.bib │ ├── c_advanced.tex │ ├── c_evolution.tex │ ├── c_immune.tex │ ├── c_introduction.tex │ ├── c_neural.tex │ ├── c_physical.tex │ ├── c_probabilistic.tex │ ├── c_stochastic.tex │ ├── c_swarm.tex │ ├── copyright.tex │ ├── definitions.tex │ ├── evolution │ │ ├── cellulargeneticalgorithm.tex │ │ ├── crowdinggeneticalgorithm.tex │ │ ├── differentialevolution.tex │ │ ├── evolutionaryprogramming.tex │ │ ├── evolutionstrategies.tex │ │ ├── geneexpressionprogramming.tex │ │ ├── geneticalgorithm.tex │ │ ├── geneticprogramming.tex │ │ ├── grammaticalevolution.tex │ │ └── islandpopulation.tex │ ├── immune │ │ ├── clonalselection.tex │ │ ├── dendriticcell.tex │ │ ├── immunenetwork.tex │ │ └── negativeselection.tex │ ├── master.tex │ ├── preface.tex │ ├── project │ │ └── plan.txt │ ├── stochastic │ │ ├── adaptiverandomsearch.tex │ │ ├── grasp.tex │ │ ├── iteratedlocalsearch.tex │ │ ├── localizedrandomsearch.tex │ │ ├── multiplerestart.tex │ │ ├── numbers.tex │ │ ├── randomsearch.tex │ │ ├── stochasticdiffusion.tex │ │ └── tabusearch.tex │ └── upquote.sty └── v0.6 │ ├── algorithm2e.sty │ ├── bibentry.sty │ ├── bibliography.bib │ ├── c_evolutionary.tex │ ├── copyright.tex │ ├── definitions.tex │ ├── evolutionary │ └── geneticalgorithm.tex │ ├── master.tex │ └── upquote.sty ├── python ├── __init__.py ├── stat_runner.py ├── stochastic │ ├── __init__.py │ ├── adaptive_random_search.py │ ├── common.py │ ├── guided_local_search.py │ ├── iterated_local_search.py │ ├── random_search.py │ ├── stochastic_hill_climbing.py │ ├── tests │ │ ├── __init__.py │ │ ├── adaptive_random_search_tests.py │ │ ├── random_search_tests.py │ │ ├── stochastic_hill_climbing_tests.py │ │ └── stochastic_tests.py │ └── variable_neighborhood_search.py └── switch.py ├── readme.markdown ├── requirements.txt ├── src ├── README ├── algorithm_selection │ ├── algorithms.txt │ ├── algorithms2.txt │ ├── results.txt │ ├── results_normalized.txt │ ├── results_organized.txt │ ├── selection.rb │ ├── selection_lib.rb │ └── selection_test.rb ├── algorithms │ ├── all_tests.sh │ ├── evolutionary │ │ ├── differential_evolution.rb │ │ ├── evolution_strategies.rb │ │ ├── evolutionary_programming.rb │ │ ├── gene_expression_programming.rb │ │ ├── genetic_algorithm.rb │ │ ├── genetic_programming.rb │ │ ├── grammatical_evolution.rb │ │ ├── learning_classifier_system.rb │ │ ├── nsgaii.rb │ │ ├── spea2.rb │ │ └── tests │ │ │ ├── tc_differential_evolution.rb │ │ │ ├── tc_evolution_strategies.rb │ │ │ ├── tc_evolutionary_programming.rb │ │ │ ├── tc_gene_expression_programming.rb │ │ │ ├── tc_genetic_algorithm.rb │ │ │ ├── tc_genetic_algorithm2.rb │ │ │ ├── tc_genetic_programming.rb │ │ │ ├── tc_grammatical_evolution.rb │ │ │ ├── tc_learning_classifier_system.rb │ │ │ ├── tc_nsgaii.rb │ │ │ └── tc_spea2.rb │ ├── immune │ │ ├── airs.rb │ │ ├── clonal_selection_algorithm.rb │ │ ├── dendritic_cell_algorithm.rb │ │ ├── negative_selection_algorithm.rb │ │ ├── optainet.rb │ │ └── tests │ │ │ ├── tc_airs.rb │ │ │ ├── tc_clonal_selection_algorithm.rb │ │ │ ├── tc_dendritic_cell_algorithm.rb │ │ │ ├── tc_negative_selection_algorithm.rb │ │ │ └── tc_optainet.rb │ ├── neural │ │ ├── backpropagation.rb │ │ ├── hopfield.rb │ │ ├── lvq.rb │ │ ├── perceptron.rb │ │ ├── som.rb │ │ └── tests │ │ │ ├── tc_backpropagation.rb │ │ │ ├── tc_hopfield.rb │ │ │ ├── tc_lvq.rb │ │ │ ├── tc_perceptron.rb │ │ │ └── tc_som.rb │ ├── physical │ │ ├── cultural_algorithm.rb │ │ ├── extremal_optimization.rb │ │ ├── harmony_search.rb │ │ ├── memetic_algorithm.rb │ │ ├── simulated_annealing.rb │ │ └── tests │ │ │ ├── tc_cultural_algorithm.rb │ │ │ ├── tc_extremal_optimization.rb │ │ │ ├── tc_harmony_search.rb │ │ │ ├── tc_memetic_algorithm.rb │ │ │ └── tc_simulated_annealing.rb │ ├── probabilistic │ │ ├── boa.rb │ │ ├── compact_genetic_algorithm.rb │ │ ├── cross_entropy_method.rb │ │ ├── pbil.rb │ │ ├── tests │ │ │ ├── tc_boa.rb │ │ │ ├── tc_compact_genetic_algorithm.rb │ │ │ ├── tc_cross_entropy_method.rb │ │ │ ├── tc_pbil.rb │ │ │ └── tc_umda.rb │ │ └── umda.rb │ ├── stochastic │ │ ├── adaptive_random_search.rb │ │ ├── grasp.rb │ │ ├── guided_local_search.rb │ │ ├── iterated_local_search.rb │ │ ├── random_search.rb │ │ ├── reactive_tabu_search.rb │ │ ├── scatter_search.rb │ │ ├── stochastic_hill_climbing.rb │ │ ├── tabu_search.rb │ │ ├── tests │ │ │ ├── tc_adaptive_random_search.rb │ │ │ ├── tc_grasp.rb │ │ │ ├── tc_guided_local_search.rb │ │ │ ├── tc_iterated_local_search.rb │ │ │ ├── tc_random_search.rb │ │ │ ├── tc_reactive_tabu_search.rb │ │ │ ├── tc_scatter_search.rb │ │ │ ├── tc_stochastic_hill_climbing.rb │ │ │ ├── tc_tabu_search.rb │ │ │ └── tc_variable_neighborhood_search.rb │ │ └── variable_neighborhood_search.rb │ └── swarm │ │ ├── ant_colony_system.rb │ │ ├── ant_system.rb │ │ ├── bees_algorithm.rb │ │ ├── bfoa.rb │ │ ├── pso.rb │ │ └── tests │ │ ├── tc_ant_colony_system.rb │ │ ├── tc_ant_system.rb │ │ ├── tc_bees_algorithm.rb │ │ ├── tc_bfoa.rb │ │ └── tc_pso.rb ├── language_comparison │ ├── analysis.rb │ ├── genetic_algorithm.lua │ ├── genetic_algorithm.pl │ ├── genetic_algorithm.py │ └── genetic_algorithm.rb ├── language_selection │ ├── languages.txt │ ├── results.txt │ ├── results_normalized.txt │ ├── results_organized.txt │ └── selection.rb └── programming_paradigms │ ├── flow.rb │ ├── oop.rb │ └── tests │ ├── tc_flow.rb │ └── tc_oop.rb ├── web ├── README.txt ├── bibtex.rb ├── bibtex │ ├── bibliography.rb │ ├── bibtex.y │ ├── elements.rb │ ├── entry.rb │ ├── error.rb │ ├── lexer.rb │ ├── parser.output │ ├── parser.rb │ └── string_replacement.rb ├── epub_assets │ ├── cover.html │ ├── cover.jpg │ └── main.css ├── generate.rb └── generate_epub.rb └── workspace ├── 00-notes ├── book-name-ideas.txt ├── project-assessment-20100102.txt ├── project-assessment-20100504.txt └── project-assessment-20101103.txt ├── 01-project-overview └── techreport-20100105-1.tex ├── 02-algorithm-description └── techreport-20100107-1.tex ├── 03-inspiring-works └── techreport-20100109-1.tex ├── 04-algorithm-selection └── techreport-20100112-1.tex ├── 05-the-field └── techreport-20100115-1.tex ├── 06-optimization-algorithms └── techreport-20100118-1.tex ├── 07-language-selection └── techreport-20100122-1.tex ├── 08-random_search └── techreport-20100129-1.tex ├── 09-adaptive-random-search └── techreport-20100131-1.tex ├── 10-hill-climbing └── techreport-20100202-1.tex ├── 11-guided-local-search └── techreport-20100204-1.tex ├── 12-variable-neighborhood-search └── techreport-20100206-1.tex ├── 13-reactive-search-optimization └── techreport-20100212-1.tex ├── 14-grasp └── techreport-20100209-1.tex ├── 15-iterated-local-search └── techreport-20100210-1.tex ├── 16-tabu-search └── techreport-20100213-1.tex ├── 17-scatter-search └── techreport-20100216-1.tex ├── 18-reactive-tabu-search └── techreport-20100221-1.tex ├── 19-stochastic_algorithms └── techreport-20100223-1.tex ├── 20-genetic-algorithm └── techreport-20100303-1.tex ├── 21-genetic-programming └── techreport-20100308-1.tex ├── 22-evolutionary_programming └── techreport-20100313-1.tex ├── 23-evolution-strategies └── techreport-20100326-1.tex ├── 24-learning-classifier-system └── techreport-20100411-1.tex ├── 25-differential-evolution └── techreport-20100402-1.tex ├── 26-grammatical-evolution └── techreport-20100403-1.tex ├── 27-gene-expression-programming └── techreport-20100404-1.tex ├── 28-nsga └── techreport-20100426-1.tex ├── 29-spea └── techreport-20100508-1.tex ├── 30-evolutionary-algorithms └── techreport-20100509-1.tex ├── 31-clonal-selection-algorithm └── techreport-20100515-1.tex ├── 32-negative-selection-algorithm └── techreport-20100516.tex ├── 33-immune-network-algorithm └── techreport-20101114-1.tex ├── 34-dendritic-cell-algorithm └── techreport-20101120-1.tex ├── 35-algorithm-testing └── techreport-20101206a-1.tex ├── 36-immune-algorithms └── techreport-20101114a-1.tex ├── 37-particle-swarm └── techreport-20101114b-1.tex ├── 38-ant-system └── techreport-20101115-1.tex ├── 39-ant-colony-system └── techreport-20101115a-1.tex ├── 40-swarm-algorithms └── techreport-20101115b-1.tex ├── 41-simulated-annealing └── techreport-20101115c-1.tex ├── 42-memetic-algorithm └── techreport-20101116-1.tex ├── 43-extremal-optimization └── techreport-20101116a-1.tex ├── 44-perceptron └── techreport-20101116b-1.tex ├── 45-backpropagation └── techreport-20101117-1.tex ├── 46-learning-vector-quantization └── techreport-20101118-1.tex ├── 47-pbil └── techreport-20101118a-1.tex ├── 48-umda └── techreport-20101118b-1.tex ├── 49-compact-genetic-algorithm └── techreport-20101118c-1.tex ├── 50-airs └── techreport-20101119-1.tex ├── 51-bees-algorithm └── techreport-20101120a-1.tex ├── 52-bfoa └── techreport-20101121-1.tex ├── 53-cultural-algorithm └── techreport-20101121a-1.tex ├── 54-harmony-search └── techreport-20101122-1.tex ├── 55-cross-entropy-method └── techreport-20101122a-1.tex ├── 56-bayesian_optimization_algorithm └── techreport-20101123-1.tex ├── 57-hopfield-network └── techreport-20101124-1.tex ├── 58-self-organizing-map └── techreport-20101124a-1.tex ├── 59-neural-algorithms └── techreport-20101124b-1.tex ├── 60-physical-algorithms └── techreport-20101125-1.tex ├── 61-probabilistic-algorithms └── techreport-20101125a-1.tex ├── 62-ruby-quick-start └── techreport-20101126-1.tex ├── 63-prorgamming-paradigms └── techreport-20101205-1.tex ├── 64-devising-new-algorithms └── techreport-20101205a-1.tex ├── 65-racing-algorithms └── techreport-20101206-1.tex ├── 66-problem-solving-method └── techreport-20101208-1.tex ├── 67-visualization ├── basin1.tex ├── basin2.tex ├── berlin52.nn.tour ├── berlin52.opt.tour ├── berlin52.optimal ├── berlin52.tsp ├── berlin52.tsp.orig ├── book │ ├── basin1.tex │ ├── basin2.tex │ ├── berlin52.nn.tour │ ├── berlin52.optimal │ ├── berlin52.tsp │ ├── boxplots1.txt │ ├── ga1.tex │ ├── ga1.txt │ ├── ga2.histogram.txt │ ├── ga2.tex │ ├── ga3.tex │ ├── generate_all.sh │ ├── pso1.pdf │ ├── pso1.ps │ ├── pso1.txt │ ├── tsp1.tex │ ├── tsp2.tex │ └── tsp3.tex ├── boxplots1.txt ├── ga1.tex ├── ga1.txt ├── ga2.histogram.txt ├── ga2.tex ├── ga2.txt ├── ga3.tex ├── ga_rs1.txt ├── ga_rs2.txt ├── ga_rs3.txt ├── genetic_algorithm.rb ├── genetic_algorithm_boxplots.rb ├── genetic_algorithm_runs.rb ├── make_boxplots.rb ├── make_histogram1.rb ├── make_nn_tsp.rb ├── make_optimal_tsp.rb ├── pso.rb ├── pso1.pdf ├── pso1.ps ├── pso1.txt ├── techreport-20101211-1.tex ├── tsp1.tex ├── tsp2.tex └── tsp3.tex ├── 68-blurb └── blurb.txt ├── README.textile ├── a_template.tex ├── algorithm2e.sty ├── bibtex.bib ├── lua.def ├── release ├── techreport-20100105-1.pdf ├── techreport-20100107-1.pdf ├── techreport-20100109-1.pdf ├── techreport-20100112-1.pdf ├── techreport-20100115-1.pdf ├── techreport-20100118-1.pdf ├── techreport-20100122-1.pdf ├── techreport-20100129-1.pdf ├── techreport-20100131-1.pdf ├── techreport-20100202-1.pdf ├── techreport-20100204-1.pdf ├── techreport-20100206-1.pdf ├── techreport-20100209-1.pdf ├── techreport-20100210-1.pdf ├── techreport-20100213-1.pdf ├── techreport-20100216-1.pdf ├── techreport-20100221-1.pdf ├── techreport-20100223-1.pdf ├── techreport-20100303-1.pdf ├── techreport-20100308-1.pdf ├── techreport-20100313-1.pdf ├── techreport-20100326-1.pdf ├── techreport-20100402-1.pdf ├── techreport-20100403-1.pdf ├── techreport-20100404-1.pdf ├── techreport-20100411-1.pdf ├── techreport-20100426-1.pdf ├── techreport-20100508-1.pdf ├── techreport-20100509-1.pdf ├── techreport-20100515-1.pdf ├── techreport-20100516-1.pdf ├── techreport-20101114-1.pdf ├── techreport-20101114a-1.pdf ├── techreport-20101114b-1.pdf ├── techreport-20101115-1.pdf ├── techreport-20101115a-1.pdf ├── techreport-20101115b-1.pdf ├── techreport-20101115c-1.pdf ├── techreport-20101116-1.pdf ├── techreport-20101116a-1.pdf ├── techreport-20101116b-1.pdf ├── techreport-20101117-1.pdf ├── techreport-20101118-1.pdf ├── techreport-20101118a-1.pdf ├── techreport-20101118b-1.pdf ├── techreport-20101118c-1.pdf ├── techreport-20101119-1.pdf ├── techreport-20101120-1.pdf ├── techreport-20101120a-1.pdf ├── techreport-20101121-1.pdf ├── techreport-20101121a-1.pdf ├── techreport-20101122-1.pdf ├── techreport-20101122a-1.pdf ├── techreport-20101123-1.pdf ├── techreport-20101124-1.pdf ├── techreport-20101124a-1.pdf ├── techreport-20101124b-1.pdf ├── techreport-20101125-1.pdf ├── techreport-20101125a-1.pdf ├── techreport-20101126-1.pdf ├── techreport-20101205-1.pdf ├── techreport-20101205a-1.pdf ├── techreport-20101206-1.pdf ├── techreport-20101206a-1.pdf ├── 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