├── .gitignore
├── README.md
├── util
    ├── directed_graph.py
    ├── entity_metadata.json
    ├── groupings.txt
    ├── make_viewer_metadata.py
    └── parts_info.txt
└── web
    ├── img
        ├── checker.png
        ├── label_close.png
        ├── label_expand.png
        ├── label_pin_and_close.png
        ├── logo.png
        ├── toggle_multiple_sliders.png
        └── toggle_single_slider.png
    ├── index.html
    ├── index.php
    ├── main_ui.css
    ├── models
        ├── astro
        │   ├── 293d29ff.tumor_astrocyte_soma_process.utf8
        │   ├── 6fbd3f8f.tumor_astrocyte_soma_process.utf8
        │   ├── e61f7da1.tumor_astrocyte_soma_process.utf8
        │   ├── entity_metadata.json
        │   ├── groupings.txt
        │   ├── layer_icons.png
        │   ├── layer_icons.psd
        │   ├── model_icon.png
        │   ├── parts_info.txt
        │   ├── tumor_astrocyte_soma_process.js
        │   └── tumor_astrocyte_soma_process.mtl
        ├── beta_cell
        │   ├── 18dfd687.cell03_def.utf8
        │   ├── 2203e603.cell03_def.utf8
        │   ├── 517ff06e.cell03_def.utf8
        │   ├── 548d0a17.cell03_def.utf8
        │   ├── 62662d57.cell03_def.utf8
        │   ├── 6d398f62.cell03_def.utf8
        │   ├── 825b5334.cell03_def.utf8
        │   ├── 994171f4.cell03_def.utf8
        │   ├── 9df7a15d.cell03_def.utf8
        │   ├── afcba9ea.cell03_def.utf8
        │   ├── b41e96df.cell03_def.utf8
        │   ├── beta_cell.js
        │   ├── c871971a.cell03_def.utf8
        │   ├── cell03_def.mtl
        │   ├── cf3368e5.cell03_def.utf8
        │   ├── entity_metadata.json
        │   ├── groupings.txt
        │   ├── layer_icons.png
        │   ├── layer_icons.psd
        │   ├── model_icon.png
        │   └── parts_info.txt
        └── granule_cell
        │   ├── 02235c6e.granule-cell.utf8
        │   ├── 04e14164.granule-cell.utf8
        │   ├── 056f6588.granule-cell.utf8
        │   ├── 05ed092c.granule-cell.utf8
        │   ├── 0712dd32.granule-cell.utf8
        │   ├── 0801306c.granule-cell.utf8
        │   ├── 0ca7a1fb.granule-cell.utf8
        │   ├── 0ed26c82.granule-cell.utf8
        │   ├── 0f20e3ff.granule-cell.utf8
        │   ├── 10f5f6bd.granule-cell.utf8
        │   ├── 11fe62f5.granule-cell.utf8
        │   ├── 13ca068f.granule-cell.utf8
        │   ├── 1444665a.granule-cell.utf8
        │   ├── 151fcacc.granule-cell.utf8
        │   ├── 1585837b.granule-cell.utf8
        │   ├── 168dedef.granule-cell.utf8
        │   ├── 185126b5.granule-cell.utf8
        │   ├── 2007bfdd.granule-cell.utf8
        │   ├── 20b2bdef.granule-cell.utf8
        │   ├── 24315277.granule-cell.utf8
        │   ├── 25a59f29.granule-cell.utf8
        │   ├── 26c739c7.granule-cell.utf8
        │   ├── 2862c8a7.granule-cell.utf8
        │   ├── 2a8b7872.granule-cell.utf8
        │   ├── 2ea68c16.granule-cell.utf8
        │   ├── 31795e91.granule-cell.utf8
        │   ├── 31abe724.granule-cell.utf8
        │   ├── 3230b2a2.granule-cell.utf8
        │   ├── 3750da67.granule-cell.utf8
        │   ├── 376b8770.granule-cell.utf8
        │   ├── 386eaeea.granule-cell.utf8
        │   ├── 38c3bfb1.granule-cell.utf8
        │   ├── 3a1d2c5e.granule-cell.utf8
        │   ├── 3cf1f402.granule-cell.utf8
        │   ├── 3d356b09.granule-cell.utf8
        │   ├── 3d49787f.granule-cell.utf8
        │   ├── 3f8f1e6c.granule-cell.utf8
        │   ├── 409ca486.granule-cell.utf8
        │   ├── 40a5a9de.granule-cell.utf8
        │   ├── 419da09f.granule-cell.utf8
        │   ├── 41cbced2.granule-cell.utf8
        │   ├── 441a811a.granule-cell.utf8
        │   ├── 44343316.granule-cell.utf8
        │   ├── 4493471e.granule-cell.utf8
        │   ├── 46999998.granule-cell.utf8
        │   ├── 4919b9d1.granule-cell.utf8
        │   ├── 4c386170.granule-cell.utf8
        │   ├── 4c4565bb.granule-cell.utf8
        │   ├── 4ec0f2a3.granule-cell.utf8
        │   ├── 593cc4f3.granule-cell.utf8
        │   ├── 5d137ce8.granule-cell.utf8
        │   ├── 5d752dc3.granule-cell.utf8
        │   ├── 5f04d564.granule-cell.utf8
        │   ├── 5fdfe009.granule-cell.utf8
        │   ├── 616cd19a.granule-cell.utf8
        │   ├── 6251f1dd.granule-cell.utf8
        │   ├── 62a7cad6.granule-cell.utf8
        │   ├── 644fb2aa.granule-cell.utf8
        │   ├── 65723f1b.granule-cell.utf8
        │   ├── 66b90035.granule-cell.utf8
        │   ├── 6714013b.granule-cell.utf8
        │   ├── 687869b6.granule-cell.utf8
        │   ├── 68eee91b.granule-cell.utf8
        │   ├── 690023ab.granule-cell.utf8
        │   ├── 6a381d36.granule-cell.utf8
        │   ├── 6d088b05.granule-cell.utf8
        │   ├── 6d695efb.granule-cell.utf8
        │   ├── 6d743931.granule-cell.utf8
        │   ├── 6dca167a.granule-cell.utf8
        │   ├── 73084888.granule-cell.utf8
        │   ├── 7633dce9.granule-cell.utf8
        │   ├── 76587dd8.granule-cell.utf8
        │   ├── 7744ddab.granule-cell.utf8
        │   ├── 7b77803d.granule-cell.utf8
        │   ├── 7ca5c93f.granule-cell.utf8
        │   ├── 7ff384af.granule-cell.utf8
        │   ├── 7ffb3771.granule-cell.utf8
        │   ├── 82c37bca.granule-cell.utf8
        │   ├── 83b925ae.granule-cell.utf8
        │   ├── 83cdad6e.granule-cell.utf8
        │   ├── 866adf8e.granule-cell.utf8
        │   ├── 897eef7b.granule-cell.utf8
        │   ├── 89cf4bfb.granule-cell.utf8
        │   ├── 8da24050.granule-cell.utf8
        │   ├── 8de99e63.granule-cell.utf8
        │   ├── 94711f2e.granule-cell.utf8
        │   ├── 980923f2.granule-cell.utf8
        │   ├── 9bfdf694.granule-cell.utf8
        │   ├── 9ff44295.granule-cell.utf8
        │   ├── a6286915.granule-cell.utf8
        │   ├── a71df433.granule-cell.utf8
        │   ├── ac841e69.granule-cell.utf8
        │   ├── b0980d02.granule-cell.utf8
        │   ├── b0c9967a.granule-cell.utf8
        │   ├── b272fb75.granule-cell.utf8
        │   ├── b2c90c50.granule-cell.utf8
        │   ├── b2fa93e0.granule-cell.utf8
        │   ├── b40624ec.granule-cell.utf8
        │   ├── b407cbab.granule-cell.utf8
        │   ├── b4e236b2.granule-cell.utf8
        │   ├── b500f925.granule-cell.utf8
        │   ├── b9a01f77.granule-cell.utf8
        │   ├── bcb31311.granule-cell.utf8
        │   ├── c4ea76dd.granule-cell.utf8
        │   ├── c5a6e59c.granule-cell.utf8
        │   ├── c96893e5.granule-cell.utf8
        │   ├── cac7df1d.granule-cell.utf8
        │   ├── cb1c1f23.granule-cell.utf8
        │   ├── cd085856.granule-cell.utf8
        │   ├── cf899e47.granule-cell.utf8
        │   ├── d1bdaee1.granule-cell.utf8
        │   ├── d23eb5f4.granule-cell.utf8
        │   ├── d4217dcc.granule-cell.utf8
        │   ├── d5886724.granule-cell.utf8
        │   ├── d885053e.granule-cell.utf8
        │   ├── d8e41aea.granule-cell.utf8
        │   ├── d9492eda.granule-cell.utf8
        │   ├── da8f6cec.granule-cell.utf8
        │   ├── da9bc2e4.granule-cell.utf8
        │   ├── dde62f3f.granule-cell.utf8
        │   ├── de3cd91b.granule-cell.utf8
        │   ├── e12e5616.granule-cell.utf8
        │   ├── e5cf40b0.granule-cell.utf8
        │   ├── e715ae55.granule-cell.utf8
        │   ├── ea065bca.granule-cell.utf8
        │   ├── ec2cbe0c.granule-cell.utf8
        │   ├── ec62df1e.granule-cell.utf8
        │   ├── entity_metadata.json
        │   ├── f14d2ce8.granule-cell.utf8
        │   ├── f15e5584.granule-cell.utf8
        │   ├── f225bfe5.granule-cell.utf8
        │   ├── f23eccc8.granule-cell.utf8
        │   ├── f787a8c4.granule-cell.utf8
        │   ├── f8167553.granule-cell.utf8
        │   ├── fc664c5d.granule-cell.utf8
        │   ├── ffd1dabd.granule-cell.utf8
        │   ├── granule-cell.js
        │   ├── granule-cell.mtl
        │   ├── groupings.txt
        │   ├── layer_icons.png
        │   ├── layer_icons.psd
        │   ├── model_icon.png
        │   └── parts_info.txt
    ├── no_webgl.html
    └── scripts
        ├── common.js
        ├── content.js
        ├── entities.js
        ├── gestures.js
        ├── gl-matrix-min.js
        ├── history.js
        ├── input_handler.js
        ├── interpolant.js
        ├── label.js
        ├── layer.js
        ├── layers_ui.js
        ├── loader.js
        ├── main_ui.js
        ├── models.js
        ├── nav_ui.js
        ├── navigate.js
        ├── opacity.js
        ├── render_interface.js
        ├── renderer.js
        ├── search.js
        ├── select.js
        ├── shaders.txt
        ├── viewer.js
        ├── webgl.js
        └── webgl_util.js


/.gitignore:
--------------------------------------------------------------------------------
1 | *.pyc


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/README.md:
--------------------------------------------------------------------------------
 1 | Program
 2 | =======
 3 | This program is based on https://code.google.com/p/open-3d-viewer/ which is
 4 | used as the basis for the [Zygote Body Browser](http://zygotebody.com/)
 5 | (previously called the Google Body Browser). So far very few changes to the
 6 | code have been made, but there are plans to develop it further.
 7 | 
 8 | Samples
 9 | -------
10 | The models provided in web/models are cellular models instead of anatomy
11 | examples like the original open-3d-viewer.
12 | 
13 | 
14 | Online Version
15 | --------------
16 | You can go to [webgl-tests.crbs.ucsd.edu](http://webgl-tests.crbs.ucsd.edu/)
17 | for an online-usable version of the program (called "Whole Cell Viewer" there).
18 | 


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/util/groupings.txt:
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  1 | cell
  2 | 	plasma_membrane_layer
  3 | 	lysosome_layer
  4 | 	mitochondrion_layer
  5 | 	nucleus_layer
  6 | 
  7 | plasma_membrane_layer
  8 | 	obj1_plasma_membrane
  9 | #	obj1_plasma_membrane
 10 | #	obj1_plasma_membrane
 11 | #	obj1_plasma_membrane
 12 | 
 13 | mitochondrion_layer
 14 | 	obj2_mitochondrion_1
 15 | 	obj3_mitochondrion_2
 16 | 	obj4_mitochondrion_3
 17 | 	obj5_mitochondrion_5
 18 | 	obj6_mitochondrion_6
 19 | 	obj7_mitochondrion_7
 20 | 	obj8_mitochondrion_8
 21 | 	obj9_mitochondrion_8
 22 | 	obj10_mitochondrion_9
 23 | 	obj11_mitochondrion_10
 24 | 	obj12_mitochondrion_11
 25 | 	obj13_mitochondrion_11
 26 | 	obj14_mitochondrion_13
 27 | 	obj15_mitochondrion_14
 28 | 	obj16_mitochondrion_15
 29 | 	obj17_mitochondrion_16
 30 | 	obj18_mitochondrion-17
 31 | 	obj19_mitochondrion_18
 32 | 	obj20_mitochondrion_19
 33 | 	obj21_mitochondrion_20
 34 | 	obj22_mitochondrion_21
 35 | 	obj23_mitochondrion_22
 36 | 	obj24_mitochondrion_23
 37 | 	obj25_mitochondrion_24
 38 | 	obj26_mitochondrion_25
 39 | 	obj27_mitochondrion_26
 40 | 	obj28_mitochondrion_27
 41 | 	obj29_mitochondrion_28
 42 | 	obj30_mitochondrion_29
 43 | 	obj31_mitochondrion_30
 44 | 	obj32_mitochondrion_31
 45 | 	obj33_mitochondrion_32
 46 | 	obj34_mitochondrion_33
 47 | 	obj35_mitochondrion_34
 48 | 	obj36_mitochondrion_35
 49 | 	obj37_mitochondrion_36
 50 | 	obj38_mitochondrion_37
 51 | 	obj39_mitochondrion_38
 52 | 	obj40_mitochondrion_39
 53 | 	obj41_mitochondrion_40
 54 | 	obj42_mitochondrion_41
 55 | 	obj43_mitochondrion_42
 56 | 	obj44_mitochondrion_43
 57 | 	obj45_mitochondrion_44
 58 | 	obj46_mitochondrion_45
 59 | 	obj47_mitochondrion_46
 60 | 	obj48_mitochondrion_47
 61 | 	obj49_mitochondrion_48
 62 | 	obj50_mitochondrion_49
 63 | 	obj51_mitochondrion_50
 64 | 	obj52_mitochondrion_51
 65 | 	obj53_mitochondrion_52
 66 | 	obj54_mitochondrion_53
 67 | 	obj55_mitochondrion_54
 68 | 	obj56_mitochondrion_55
 69 | 	obj57_mitochondrion_56
 70 | 	obj58_mitochondrion_57
 71 | 	obj59_mitochondrion_58
 72 | 	obj60_mitochondrion_59
 73 | 	obj61_mitochondrion_60
 74 | 	obj62_mitochondrion_61
 75 | 	obj63_mitochondrion_62
 76 | 	obj64_mitochondrion_63
 77 | 	obj65_mitochondrion_64
 78 | 	obj66_mitochondrion_65
 79 | 	obj67_mitochondrion_66
 80 | 	obj68_mitochondrion_67
 81 | 	obj69_mitochondrion_68
 82 | 	obj70_mitochondrion_69
 83 | 	obj71_mitochondrion_70
 84 | 	obj72_mitochondrion_71
 85 | 	obj73_mitochondrion_72
 86 | 	obj74_mitochondrion_73
 87 | 	obj75_mitochondrion_74
 88 | 	obj76_mitochondrion_75
 89 | 	obj77_mitochondrion_76
 90 | 	obj78_mitochondrion_77
 91 | 	obj79_mitochondrion_78
 92 | 	obj80_mitochondrion_79
 93 | 	obj81_mitochondrion_80
 94 | 	obj82_mitochondrion_81
 95 | 	obj83_mitochondrion_82
 96 | 	obj84_mitochondrion_83
 97 | 	obj85_mitochondrion_84
 98 | 	obj86_mitochondrion_85	
 99 | 
100 | lysosome_layer
101 | 	obj88_gc_mbo_lysosome_002
102 | 	obj89_gc_mbo_lysosome_003
103 | 	obj90_gc_mbo_lysosome_004
104 | 	obj91_gc_mbo_lysosome_005
105 | 	obj92_gc_mbo_lysosome_006
106 | 	obj93_gc_mbo_lysosome_007
107 | 	obj94_gc_mbo_lysosome_008
108 | 	obj95_gc_mbo_lysosome_010
109 | 	obj96_gc_mbo_lysosome_011
110 | 	obj97_gc_mbo_lysosome_012
111 | 	obj98_gc_mbo_lysosome_013
112 | 	obj99_
113 | 	obj100_gc_mbo_lysosome_014
114 | 	obj101_gc_mbo_lysosome_015
115 | 	obj102_
116 | 	obj103_gc_mbo_lysosome_016
117 | 	obj104_
118 | 	obj105_gc_mbo_lysosome_016
119 | 	obj106_gc_mbo_lysosome_017
120 | 	obj107_gc_mbo_lysosome_019
121 | 	obj108_gc_mbo_lysosome_020
122 | 	obj109_gc_mbo_lysosome_021
123 | 	obj110_gc_mbo_lysosome_022
124 | 	obj111_gc_mbo_lysosome_023
125 | 	obj112_gc_mbo_lysosome_025
126 | 	obj113_gc_mbo_lysosome_025
127 | 	obj114_gc_mbo_lysosome_027
128 | 	obj115_
129 | 	obj116_gc_mbo_lysosome_029
130 | 	obj117_
131 | 	obj118_gc_mbo_lysosome_030s
132 | 	obj119_gc_mbo_lysosome_027
133 | 	obj120_gc_mbo_lysosome_030
134 | 	obj121_
135 | 	obj122_
136 | 	obj123_
137 | 	obj124_
138 | 	obj125_
139 | 	obj126_
140 | 	obj127_
141 | 	obj128_lysosome
142 | 	obj129_lysosome_3
143 | 	obj130_lysosome_6
144 | 	obj131_lysosome_7
145 | 	obj132_lysosome_8
146 | 	obj133_lysosome_9
147 | 	obj134_lysosome_10
148 | 	obj135_lysosome_11
149 | 
150 | nucleus_layer
151 | 	obj87_dggc_mbo_nucleus_001
152 | #	obj87_dggc_mbo_nucleus_001
153 | 


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/web/img/checker.png:
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https://raw.githubusercontent.com/slash-segmentation/open-3d-viewer/be2c41e0542ac170aa3948af4e5bdadf75922b02/web/img/checker.png


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/web/img/label_close.png:
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https://raw.githubusercontent.com/slash-segmentation/open-3d-viewer/be2c41e0542ac170aa3948af4e5bdadf75922b02/web/img/label_close.png


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/web/img/label_expand.png:
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https://raw.githubusercontent.com/slash-segmentation/open-3d-viewer/be2c41e0542ac170aa3948af4e5bdadf75922b02/web/img/label_expand.png


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/web/img/label_pin_and_close.png:
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https://raw.githubusercontent.com/slash-segmentation/open-3d-viewer/be2c41e0542ac170aa3948af4e5bdadf75922b02/web/img/label_pin_and_close.png


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/web/img/logo.png:
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https://raw.githubusercontent.com/slash-segmentation/open-3d-viewer/be2c41e0542ac170aa3948af4e5bdadf75922b02/web/img/logo.png


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/web/img/toggle_multiple_sliders.png:
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https://raw.githubusercontent.com/slash-segmentation/open-3d-viewer/be2c41e0542ac170aa3948af4e5bdadf75922b02/web/img/toggle_multiple_sliders.png


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/web/img/toggle_single_slider.png:
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https://raw.githubusercontent.com/slash-segmentation/open-3d-viewer/be2c41e0542ac170aa3948af4e5bdadf75922b02/web/img/toggle_single_slider.png


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/web/main_ui.css:
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  1 | /**
  2 |  * CSS styles for main UI components of open-3d-viewer
  3 |  */
  4 | body {
  5 |   margin: 0px;
  6 |   overflow:hidden;
  7 |   background: #111111;
  8 | }
  9 | 
 10 | /* Tweaks to jQuery theme */
 11 | .ui-widget {
 12 |   font-family: arial;
 13 |   font-size: 10pt;
 14 | }
 15 | 
 16 | .ui-autocomplete {
 17 | 	max-height: 200px;
 18 | 	overflow-y: hidden;
 19 | 	/* prevent horizontal scrollbar */
 20 | 	overflow-x: hidden;
 21 | 	/* add padding to account for vertical scrollbar */
 22 | 	padding-right: 20px;
 23 | }
 24 | 
 25 | .label_select, .label_select_expandable, .label_pin, .label_pin_expandable {
 26 |   position: absolute;
 27 |   border-radius: 3px;
 28 |   white-space: nowrap;
 29 |   font-family: arial, sans-serif;
 30 |   font-size: 12px;
 31 |   text-align: center;
 32 |   background-repeat: no-repeat;
 33 | }
 34 | 
 35 | .label_select {
 36 |   padding: 3px 37px 3px 5px;
 37 |   background-image: url('img/label_pin_and_close.png');
 38 |   background-position: right center;
 39 |   background-color: #fff;
 40 |   border: 1px solid #333;
 41 |   color: #333;
 42 |   z-index: 5;
 43 | }
 44 | 
 45 | .label_select_expandable {
 46 |   padding: 3px 37px 3px 21px;
 47 |   background-image: url('img/label_expand.png'), url('img/label_pin_and_close.png');
 48 |   background-position: left center, right center;
 49 |   background-color: #fff;
 50 |   border: 1px solid #333;
 51 |   color: #333;
 52 |   z-index: 5;
 53 | }
 54 | 
 55 | .label_pin {
 56 |   padding: 3px 21px 3px 5px;
 57 |   font-weight: bold;
 58 |   background-image: url('img/label_close.png');
 59 |   background-position: right center;
 60 |   background-color: #b6dcaa;
 61 |   border: 1px solid #000;
 62 |   color: #000;
 63 |   z-index: 4;
 64 | }
 65 | 
 66 | .label_pin_expandable {
 67 |   padding: 3px 21px 3px 21px;
 68 |   font-weight: bold;
 69 |   background-image: url('img/label_expand.png'), url('img/label_close.png');
 70 |   background-position: left center, right center;
 71 |   background-color: #b6dcaa;
 72 |   border: 1px solid #000;
 73 |   color: #000;
 74 |   z-index: 4;
 75 | }
 76 | 
 77 | .help, .help-hidden {
 78 |   background: none repeat scroll 0 0 #FFFFFF;
 79 |   border: 1px solid #55CC55;
 80 |   border-radius: 7px 7px 7px 7px;
 81 |   font-family: arial;
 82 |   font-size: 12px;
 83 |   left: 100%;
 84 |   padding: 7px;
 85 |   position: absolute;
 86 |   top: 100%;
 87 |   z-index: 50;
 88 | }
 89 | 
 90 | .help {
 91 |   margin-left: -395px;
 92 |   margin-top: -430px;
 93 |   width: 370px;
 94 |   display:none;
 95 |   opacity: 0.85;
 96 | }
 97 | 
 98 | .help-hidden {
 99 |   display: block;
100 |   margin-left: -175px;
101 |   margin-top: -40px;
102 |   width: 150px;
103 |   opacity: 0.4;
104 | }
105 | 
106 | .loading-feedback {
107 |   position: absolute;
108 |   left: 50%;
109 |   margin-left: -50px;
110 |   width: 100px;
111 |   top: 50%;
112 |   font-family: arial;
113 |   font-size: 12px;
114 |   border: 1px solid #55CC55;
115 |   border-radius: 7px 7px 7px 7px;
116 |   text-align: center;
117 |   padding: 7px;
118 |   z-index: 50;
119 |   color: white;
120 | }
121 | 
122 | .indicator {
123 |   position:absolute;
124 |   width:10px;
125 |   height:10px;
126 |   background:#000;
127 |   z-index:1000;
128 |   border-radius: 5px 5px 5px 5px;
129 |   left: -100px;
130 |   top: -100px;
131 | }
132 | 


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/web/models/astro/entity_metadata.json:
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1 | {"layers":[10,11,12],"dag":[[12,[5001]],[1,[12,11,10]],[10,[5003]],[11,[5002]]],"symmetries":[],"names":[[5001,"nuclear membrane"],[5001,"nucleus"],[12,"nucleus layer"],[11,"mitochondrion layer"],[10,"plasma membrane layer"],[5003,"plasma membrane"],[5003,"cell membrane"],[5002,"mitochondria"]],"leafs":[[5001,"obj1_nuclear_outer_membrane"],[5002,"obj2_mitochondrial_membrane_outer"],[5003,"obj3_cellular_membrane"]],"hidden":[1,10,11,12],"nodes":[[12,"nucleus_layer"],[1,"cell"],[10,"plasma_membrane_layer"],[11,"mitochondrion_layer"]],"sublayers":[]}


--------------------------------------------------------------------------------
/web/models/astro/groupings.txt:
--------------------------------------------------------------------------------
 1 | cell
 2 | 	plasma_membrane_layer
 3 | 	mitochondrion_layer
 4 | 	nucleus_layer
 5 | 
 6 | plasma_membrane_layer
 7 | 	obj3_cellular_membrane
 8 | 
 9 | mitochondrion_layer
10 | 	obj2_mitochondrial_membrane_outer
11 | 
12 | nucleus_layer
13 | 	obj1_nuclear_outer_membrane
14 | 


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/web/models/astro/layer_icons.png:
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https://raw.githubusercontent.com/slash-segmentation/open-3d-viewer/be2c41e0542ac170aa3948af4e5bdadf75922b02/web/models/astro/model_icon.png


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/web/models/astro/parts_info.txt:
--------------------------------------------------------------------------------
 1 | # Parts
 2 | 
 3 | obj1_nuclear_outer_membrane
 4 | 	id: 5001
 5 | 	type: part
 6 | 	display_name_en_us: nuclear membrane
 7 | 	synonyms_en_us: nucleus
 8 | 
 9 | obj2_mitochondrial_membrane_outer
10 | 	id: 5002
11 | 	type: part
12 | 	display_name_en_us: mitochondria
13 | 
14 | obj3_cellular_membrane
15 | 	id: 5003
16 | 	type: part
17 | 	display_name_en_us: plasma membrane
18 | 	synonyms_en_us: cell membrane
19 | 
20 | # Layers
21 | 
22 | plasma_membrane_layer
23 | 	id: 10
24 | 	type: group
25 | 	display_name_en_us: plasma membrane layer
26 | 	layer: yes
27 | 	hidden: yes
28 | 
29 | mitochondrion_layer
30 | 	id: 11
31 | 	type: group
32 | 	display_name_en_us: mitochondrion layer
33 | 	layer: yes
34 | 	hidden: yes
35 | 
36 | nucleus_layer
37 | 	id: 12
38 | 	type: group
39 | 	display_name_en_us: nucleus layer
40 | 	layer: yes
41 | 	hidden: yes
42 | 
43 | # Groups
44 | 
45 | cell
46 | 	id: 1
47 | 	type: group
48 | 	hidden: yes
49 | 
50 | 


--------------------------------------------------------------------------------
/web/models/astro/tumor_astrocyte_soma_process.js:
--------------------------------------------------------------------------------
 1 | MODELS['tumor_astrocyte_soma_process.obj'] = {
 2 |   materials: {
 3 |     'obj1_nuclear_outer_membrane': {
 4 |       Ka: [0, 35, 66],
 5 |       Kd: [0, 89, 165],
 6 |       Ks: [0, 44, 82],
 7 |       Ns: 15.686300,
 8 |       d: 94
 9 |     },
10 |     'obj2_mitochondrial_membrane_outer': {
11 |       Ka: [59, 0, 102],
12 |       Kd: [149, 0, 255],
13 |       Ks: [74, 0, 126],
14 |       Ns: 15.686300,
15 |       d: 40
16 |     },
17 |     'obj3_cellular_membrane': {
18 |       Ka: [85, 102, 102],
19 |       Kd: [212, 255, 255],
20 |       Ks: [106, 126, 126],
21 |       Ns: 15.686300,
22 |       d: 193
23 |     }
24 |   },
25 |   decodeParams: {
26 |     decodeOffsets: [-8191,-3742,-6481,0,0,-511,-511,-511],
27 |     decodeScales: [0.013953525, 0.013953525, 0.013953525, 0.000978, 0.000978, 0.001957, 0.001957, 0.001957]
28 |   },
29 |   urls: {
30 |     '6fbd3f8f.tumor_astrocyte_soma_process.utf8': [
31 |       { material: 'obj1_nuclear_outer_membrane',
32 |         attribRange: [0, 35667],
33 |         indexRange: [285336, 71294],
34 |         bboxes: 499218,
35 |         names: ['obj1_nuclear_outer_membrane'],
36 |         lengths: [213882]
37 |       }
38 |     ],
39 |     '293d29ff.tumor_astrocyte_soma_process.utf8': [
40 |       { material: 'obj2_mitochondrial_membrane_outer',
41 |         attribRange: [0, 55294],
42 |         indexRange: [442352, 110492],
43 |         bboxes: 967246,
44 |         names: ['obj2_mitochondrial_membrane_outer'],
45 |         lengths: [331476]
46 |       },
47 |       { material: 'obj2_mitochondrial_membrane_outer',
48 |         attribRange: [773828, 13861],
49 |         indexRange: [884716, 27510],
50 |         bboxes: 967252,
51 |         names: ['obj2_mitochondrial_membrane_outer'],
52 |         lengths: [82530]
53 |       }
54 |     ],
55 |     'e61f7da1.tumor_astrocyte_soma_process.utf8': [
56 |       { material: 'obj3_cellular_membrane',
57 |         attribRange: [0, 55294],
58 |         indexRange: [442352, 108062],
59 |         bboxes: 2175194,
60 |         names: ['obj3_cellular_membrane'],
61 |         lengths: [324186]
62 |       },
63 |       { material: 'obj3_cellular_membrane',
64 |         attribRange: [766538, 55294],
65 |         indexRange: [1208890, 107733],
66 |         bboxes: 2175200,
67 |         names: ['obj3_cellular_membrane'],
68 |         lengths: [323199]
69 |       },
70 |       { material: 'obj3_cellular_membrane',
71 |         attribRange: [1532089, 46727],
72 |         indexRange: [1905905, 89763],
73 |         bboxes: 2175206,
74 |         names: ['obj3_cellular_membrane'],
75 |         lengths: [269289]
76 |       }
77 |     ]
78 |   }
79 | };
80 | 


--------------------------------------------------------------------------------
/web/models/astro/tumor_astrocyte_soma_process.mtl:
--------------------------------------------------------------------------------
 1 | # WaveFront *.mtl file (generated from an IMOD model by imod2obj)
 2 | 
 3 | 
 4 | 
 5 | #MATERIAL FOR OBJECT 1:
 6 | newmtl obj1_Nuclear_Outer_Membrane
 7 | Ka 0 0.139608 0.258824
 8 | Kd 0 0.34902 0.647059
 9 | Ks 0 0.173825 0.322261
10 | Ns 15.6863
11 | d 0.37
12 | Tr 0.37
13 | 
14 | 
15 | #MATERIAL FOR OBJECT 2:
16 | newmtl obj2_Mitochondrial_Membrane_Outer
17 | Ka 0.233726 0 0.4
18 | Kd 0.584314 0 1
19 | Ks 0.291011 0 0.498039
20 | Ns 15.6863
21 | d 0.16
22 | Tr 0.16
23 | 
24 | 
25 | #MATERIAL FOR OBJECT 3:
26 | newmtl obj3_Cellular_Membrane
27 | Ka 0.334118 0.4 0.4
28 | Kd 0.835294 1 1
29 | Ks 0.416009 0.498039 0.498039
30 | Ns 15.6863
31 | d 0.76
32 | Tr 0.76
33 | 
34 | 
35 | 
36 | # For more info on MTL file format see:
37 | #  http://en.wikipedia.org/wiki/Material_Template_Library


--------------------------------------------------------------------------------
/web/models/beta_cell/cell03_def.mtl:
--------------------------------------------------------------------------------
  1 | # WaveFront *.mtl file (generated from an IMOD model by imod2obj)
  2 | 
  3 | 
  4 | 
  5 | #MATERIAL FOR OBJECT 1:
  6 | newmtl obj1_Golgi_Apparatus
  7 | Ka 0.156863 0.156863 0.156863
  8 | Kd 0.392157 0.392157 0.392157
  9 | Ks 0.19531 0.19531 0.19531
 10 | Ns 15.6863
 11 | d 0
 12 | Tr 0
 13 | 
 14 | 
 15 | #MATERIAL FOR OBJECT 2:
 16 | newmtl obj2_Golgi_Trans-most_Cisternae
 17 | Ka 0.4 0 0
 18 | Kd 1 0 0
 19 | Ks 0.498039 0 0
 20 | Ns 15.6863
 21 | d 0
 22 | Tr 0
 23 | 
 24 | 
 25 | #MATERIAL FOR OBJECT 3:
 26 | newmtl obj3_Golgi_C8
 27 | Ka 0.4 0.200784 0.0470588
 28 | Kd 1 0.501961 0.117647
 29 | Ks 0.498039 0.249996 0.0585928
 30 | Ns 15.6863
 31 | d 0
 32 | Tr 0
 33 | 
 34 | 
 35 | #MATERIAL FOR OBJECT 4:
 36 | newmtl obj4_Plasma_Membrane
 37 | Ka 0.4 0.334118 0.4
 38 | Kd 1 0.835294 1
 39 | Ks 0.498039 0.416009 0.498039
 40 | Ns 15.6863
 41 | d 0.5
 42 | Tr 0.5
 43 | 
 44 | 
 45 | #MATERIAL FOR OBJECT 5:
 46 | newmtl obj5_Nucleus
 47 | Ka 0.4 0.4 0
 48 | Kd 1 1 0
 49 | Ks 0.498039 0.498039 0
 50 | Ns 15.6863
 51 | d 0
 52 | Tr 0
 53 | 
 54 | 
 55 | #MATERIAL FOR OBJECT 6:
 56 | newmtl obj6_Mitochondrion_SINGLE
 57 | Ka 0 0.196078 0
 58 | Kd 0 0.490196 0
 59 | Ks 0 0.244137 0
 60 | Ns 15.6863
 61 | d 0
 62 | Tr 0
 63 | 
 64 | 
 65 | #MATERIAL FOR OBJECT 7:
 66 | newmtl obj7_Mitochondrion_MAIN_LENGTHS
 67 | Ka 0 0.196078 0
 68 | Kd 0 0.490196 0
 69 | Ks 0 0.244137 0
 70 | Ns 15.6863
 71 | d 0
 72 | Tr 0
 73 | 
 74 | 
 75 | #MATERIAL FOR OBJECT 8:
 76 | newmtl obj8_Mitochondrion_BRANCHES
 77 | Ka 0 0.196078 0
 78 | Kd 0 0.490196 0
 79 | Ks 0 0.244137 0
 80 | Ns 15.6863
 81 | d 0
 82 | Tr 0
 83 | 
 84 | 
 85 | #MATERIAL FOR OBJECT 9:
 86 | newmtl obj9_Mature_Insulin_Granule
 87 | Ka 0 0 0.4
 88 | Kd 0 0 1
 89 | Ks 0 0 0.498039
 90 | Ns 15.6863
 91 | d 0.89
 92 | Tr 0.89
 93 | 
 94 | 
 95 | #MATERIAL FOR OBJECT 10:
 96 | newmtl obj10_Immature_Insulin_Granule
 97 | Ka 0.109804 0.266667 0.4
 98 | Kd 0.27451 0.666667 1
 99 | Ks 0.136717 0.332026 0.498039
100 | Ns 15.6863
101 | d 0
102 | Tr 0
103 | 
104 | 
105 | #MATERIAL FOR OBJECT 11:
106 | newmtl obj11_Immature_Insulin_Granule_HAND
107 | Ka 0.109804 0.266667 0.4
108 | Kd 0.27451 0.666667 1
109 | Ks 0.136717 0.332026 0.498039
110 | Ns 15.6863
111 | d 0
112 | Tr 0
113 | 
114 | 
115 | #MATERIAL FOR OBJECT 12:
116 | newmtl obj12_Multivesicular_Body
117 | Ka 0.4 0.243137 0
118 | Kd 1 0.607843 0
119 | Ks 0.498039 0.30273 0
120 | Ns 15.6863
121 | d 0
122 | Tr 0
123 | 
124 | 
125 | #MATERIAL FOR OBJECT 13:
126 | newmtl obj13_Vesicle_SPHERES
127 | Ka 0.4 0.4 0.4
128 | Kd 1 1 1
129 | Ks 0.498039 0.498039 0.498039
130 | Ns 15.6863
131 | d 0
132 | Tr 0
133 | 
134 | 
135 | #MATERIAL FOR OBJECT 14:
136 | newmtl obj14_Plasma_Membrane_External_Area
137 | Ka 0.266667 0.109804 0
138 | Kd 0.666667 0.27451 0
139 | Ks 0.332026 0.136717 0
140 | Ns 15.6863
141 | d 0
142 | Tr 0
143 | 
144 | 
145 | #MATERIAL FOR OBJECT 15:
146 | newmtl obj15_Microtubule
147 | Ka 0.2 0.4 0
148 | Kd 0.5 1 0
149 | Ks 0.24902 0.498039 0
150 | Ns 15.6863
151 | d 0
152 | Tr 0
153 | 
154 | 
155 | #MATERIAL FOR OBJECT 16:
156 | newmtl obj16_Mitochondrion_PANCAKES
157 | Ka 0 0.196078 0
158 | Kd 0 0.490196 0
159 | Ks 0 0.244137 0
160 | Ns 15.6863
161 | d 0
162 | Tr 0
163 | 
164 | 
165 | 
166 | # For more info on MTL file format see:
167 | #  http://en.wikipedia.org/wiki/Material_Template_Library


--------------------------------------------------------------------------------
/web/models/beta_cell/layer_icons.png:
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https://raw.githubusercontent.com/slash-segmentation/open-3d-viewer/be2c41e0542ac170aa3948af4e5bdadf75922b02/web/models/beta_cell/layer_icons.png


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/web/models/beta_cell/model_icon.png:
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https://raw.githubusercontent.com/slash-segmentation/open-3d-viewer/be2c41e0542ac170aa3948af4e5bdadf75922b02/web/models/beta_cell/model_icon.png


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/web/models/granule_cell/groupings.txt:
--------------------------------------------------------------------------------
  1 | cell
  2 | 	plasma_membrane_layer
  3 | 	lysosome_layer
  4 | 	mitochondrion_layer
  5 | 	nucleus_layer
  6 | 
  7 | plasma_membrane_layer
  8 | 	obj1_plasma_membrane
  9 | #	obj1_plasma_membrane
 10 | #	obj1_plasma_membrane
 11 | #	obj1_plasma_membrane
 12 | 
 13 | mitochondrion_layer
 14 | 	obj2_mitochondrion_1
 15 | 	obj3_mitochondrion_2
 16 | 	obj4_mitochondrion_3
 17 | 	obj5_mitochondrion_5
 18 | 	obj6_mitochondrion_6
 19 | 	obj7_mitochondrion_7
 20 | 	obj8_mitochondrion_8
 21 | 	obj9_mitochondrion_8
 22 | 	obj10_mitochondrion_9
 23 | 	obj11_mitochondrion_10
 24 | 	obj12_mitochondrion_11
 25 | 	obj13_mitochondrion_11
 26 | 	obj14_mitochondrion_13
 27 | 	obj15_mitochondrion_14
 28 | 	obj16_mitochondrion_15
 29 | 	obj17_mitochondrion_16
 30 | 	obj18_mitochondrion-17
 31 | 	obj19_mitochondrion_18
 32 | 	obj20_mitochondrion_19
 33 | 	obj21_mitochondrion_20
 34 | 	obj22_mitochondrion_21
 35 | 	obj23_mitochondrion_22
 36 | 	obj24_mitochondrion_23
 37 | 	obj25_mitochondrion_24
 38 | 	obj26_mitochondrion_25
 39 | 	obj27_mitochondrion_26
 40 | 	obj28_mitochondrion_27
 41 | 	obj29_mitochondrion_28
 42 | 	obj30_mitochondrion_29
 43 | 	obj31_mitochondrion_30
 44 | 	obj32_mitochondrion_31
 45 | 	obj33_mitochondrion_32
 46 | 	obj34_mitochondrion_33
 47 | 	obj35_mitochondrion_34
 48 | 	obj36_mitochondrion_35
 49 | 	obj37_mitochondrion_36
 50 | 	obj38_mitochondrion_37
 51 | 	obj39_mitochondrion_38
 52 | 	obj40_mitochondrion_39
 53 | 	obj41_mitochondrion_40
 54 | 	obj42_mitochondrion_41
 55 | 	obj43_mitochondrion_42
 56 | 	obj44_mitochondrion_43
 57 | 	obj45_mitochondrion_44
 58 | 	obj46_mitochondrion_45
 59 | 	obj47_mitochondrion_46
 60 | 	obj48_mitochondrion_47
 61 | 	obj49_mitochondrion_48
 62 | 	obj50_mitochondrion_49
 63 | 	obj51_mitochondrion_50
 64 | 	obj52_mitochondrion_51
 65 | 	obj53_mitochondrion_52
 66 | 	obj54_mitochondrion_53
 67 | 	obj55_mitochondrion_54
 68 | 	obj56_mitochondrion_55
 69 | 	obj57_mitochondrion_56
 70 | 	obj58_mitochondrion_57
 71 | 	obj59_mitochondrion_58
 72 | 	obj60_mitochondrion_59
 73 | 	obj61_mitochondrion_60
 74 | 	obj62_mitochondrion_61
 75 | 	obj63_mitochondrion_62
 76 | 	obj64_mitochondrion_63
 77 | 	obj65_mitochondrion_64
 78 | 	obj66_mitochondrion_65
 79 | 	obj67_mitochondrion_66
 80 | 	obj68_mitochondrion_67
 81 | 	obj69_mitochondrion_68
 82 | 	obj70_mitochondrion_69
 83 | 	obj71_mitochondrion_70
 84 | 	obj72_mitochondrion_71
 85 | 	obj73_mitochondrion_72
 86 | 	obj74_mitochondrion_73
 87 | 	obj75_mitochondrion_74
 88 | 	obj76_mitochondrion_75
 89 | 	obj77_mitochondrion_76
 90 | 	obj78_mitochondrion_77
 91 | 	obj79_mitochondrion_78
 92 | 	obj80_mitochondrion_79
 93 | 	obj81_mitochondrion_80
 94 | 	obj82_mitochondrion_81
 95 | 	obj83_mitochondrion_82
 96 | 	obj84_mitochondrion_83
 97 | 	obj85_mitochondrion_84
 98 | 	obj86_mitochondrion_85	
 99 | 
100 | lysosome_layer
101 | 	obj88_gc_mbo_lysosome_002
102 | 	obj89_gc_mbo_lysosome_003
103 | 	obj90_gc_mbo_lysosome_004
104 | 	obj91_gc_mbo_lysosome_005
105 | 	obj92_gc_mbo_lysosome_006
106 | 	obj93_gc_mbo_lysosome_007
107 | 	obj94_gc_mbo_lysosome_008
108 | 	obj95_gc_mbo_lysosome_010
109 | 	obj96_gc_mbo_lysosome_011
110 | 	obj97_gc_mbo_lysosome_012
111 | 	obj98_gc_mbo_lysosome_013
112 | 	obj99_
113 | 	obj100_gc_mbo_lysosome_014
114 | 	obj101_gc_mbo_lysosome_015
115 | 	obj102_
116 | 	obj103_gc_mbo_lysosome_016
117 | 	obj104_
118 | 	obj105_gc_mbo_lysosome_016
119 | 	obj106_gc_mbo_lysosome_017
120 | 	obj107_gc_mbo_lysosome_019
121 | 	obj108_gc_mbo_lysosome_020
122 | 	obj109_gc_mbo_lysosome_021
123 | 	obj110_gc_mbo_lysosome_022
124 | 	obj111_gc_mbo_lysosome_023
125 | 	obj112_gc_mbo_lysosome_025
126 | 	obj113_gc_mbo_lysosome_025
127 | 	obj114_gc_mbo_lysosome_027
128 | 	obj115_
129 | 	obj116_gc_mbo_lysosome_029
130 | 	obj117_
131 | 	obj118_gc_mbo_lysosome_030s
132 | 	obj119_gc_mbo_lysosome_027
133 | 	obj120_gc_mbo_lysosome_030
134 | 	obj121_
135 | 	obj122_
136 | 	obj123_
137 | 	obj124_
138 | 	obj125_
139 | 	obj126_
140 | 	obj127_
141 | 	obj128_lysosome
142 | 	obj129_lysosome_3
143 | 	obj130_lysosome_6
144 | 	obj131_lysosome_7
145 | 	obj132_lysosome_8
146 | 	obj133_lysosome_9
147 | 	obj134_lysosome_10
148 | 	obj135_lysosome_11
149 | 
150 | nucleus_layer
151 | 	obj87_dggc_mbo_nucleus_001
152 | #	obj87_dggc_mbo_nucleus_001
153 | 


--------------------------------------------------------------------------------
/web/models/granule_cell/layer_icons.png:
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https://raw.githubusercontent.com/slash-segmentation/open-3d-viewer/be2c41e0542ac170aa3948af4e5bdadf75922b02/web/models/granule_cell/layer_icons.png


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/web/models/granule_cell/layer_icons.psd:
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https://raw.githubusercontent.com/slash-segmentation/open-3d-viewer/be2c41e0542ac170aa3948af4e5bdadf75922b02/web/models/granule_cell/layer_icons.psd


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/web/models/granule_cell/model_icon.png:
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https://raw.githubusercontent.com/slash-segmentation/open-3d-viewer/be2c41e0542ac170aa3948af4e5bdadf75922b02/web/models/granule_cell/model_icon.png


--------------------------------------------------------------------------------
/web/no_webgl.html:
--------------------------------------------------------------------------------
 1 | <!doctype html>
 2 | <html>
 3 | <head>
 4 | <title>WebGL not supported</title>
 5 | <style>
 6 | body { font-family: arial, sans-serif; font-size: 11pt; }
 7 | .headline { font-size: 14pt; }
 8 | </style>
 9 | </head>
10 | <body>
11 | <img src="img/logo.png">
12 | <span class="headline">WebGL not supported</span>
13 | <hr>
14 | This product uses WebGL, which your browser does not appear to support. Possible reasons:
15 | 
16 | <ul>
17 | <li><b>Your Web browser actually doesn't support WebGL.</b><br>Check <a href="http://www.khronos.org/webgl/wiki/Getting_a_WebGL_Implementation">this page</a> for a list of browsers that do.</li>
18 | <li><b>Your video driver or operating system is not supported.</b><br>To ensure fast performance and prevent crashes, some browsers that support WebGL  deactivate it for particular video driver and operating system versions. (For some browsers it is possible to override this -- you can manually turn WebGL back on by changing a setting. Do so at your own risk.)</li>
19 | </ul>
20 | </body>
21 | </html>


--------------------------------------------------------------------------------
/web/scripts/content.js:
--------------------------------------------------------------------------------
  1 | // Copyright 2011 Google Inc. All Rights Reserved.
  2 | //
  3 | // Licensed under the Apache License, Version 2.0 (the "License");
  4 | // you may not use this file except in compliance with the License.
  5 | // You may obtain a copy of the License at
  6 | //
  7 | //     http://www.apache.org/licenses/LICENSE-2.0
  8 | //
  9 | // Unless required by applicable law or agreed to in writing, software
 10 | // distributed under the License is distributed on an "AS IS" BASIS,
 11 | // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 12 | // See the License for the specific language governing permissions and
 13 | // limitations under the License.
 14 | 
 15 | /**
 16 |  * @fileoverview This object keeps track of the model currently loaded.
 17 |  *               On initialization, loads model 0 in o3v.MODELS.
 18 |  */
 19 | o3v.ContentManager = function() {
 20 |   this.models_ = o3v.MODELS;
 21 |   this.metadata_ = null;
 22 |   this.currentModel_ = -1;  // Force it to cycle to the first model.
 23 | 
 24 |   // metadata caches.
 25 |   this.scriptsLoaded_ = {};  // e.g. adult_female.js
 26 |   this.metadataLoaded_ = {};  // e.g. entity_metadata.json
 27 | };
 28 | 
 29 | o3v.ContentManager.prototype.nextModel = function(loadModelInfoCallback,
 30 |                                                   loadMeshCallback,
 31 |                                                   loadModelCallback,
 32 |                                                   loadMetadataCallback) {
 33 |   this.currentModel_ = (this.currentModel_ + 1) % this.models_.length;
 34 | 
 35 |   loadModelInfoCallback(this.models_[this.currentModel_]);
 36 | 
 37 |   this.loadModel_(this.models_[this.currentModel_],
 38 |                   loadMeshCallback, loadModelCallback, loadMetadataCallback);
 39 | };
 40 | 
 41 | o3v.ContentManager.prototype.getCurrentModelInfo = function() {
 42 |   return this.models_[this.currentModel_];
 43 | };
 44 | 
 45 | o3v.ContentManager.prototype.loadModel_ =
 46 |     function(modelInfo,
 47 |              loadMeshCallback,  // After each mesh
 48 |              loadModelCallback,  // After all meshes
 49 |              loadMetadataCallback  // After metadata
 50 |              ) {
 51 |   // First, load javascript.
 52 |   var scriptPath = modelInfo.modelPath + modelInfo.scriptName;
 53 |   if (this.scriptsLoaded_[scriptPath]) {
 54 |     this.loadModelAfterScript_(modelInfo, loadMeshCallback, loadModelCallback,
 55 |                                loadMetadataCallback);
 56 |   } else {
 57 |     $.getScript(scriptPath, function() {
 58 |         this.scriptsLoaded_[scriptPath] = true;
 59 |         this.loadModelAfterScript_(modelInfo, loadMeshCallback,
 60 |                                    loadModelCallback,
 61 |                                    loadMetadataCallback);
 62 |       }.bind(this));
 63 |   }
 64 | };
 65 | 
 66 | o3v.ContentManager.prototype.loadModelAfterScript_ =
 67 |     function(modelInfo,
 68 |              loadMeshCallback,  // After each mesh
 69 |              loadModelCallback,  // After all meshes
 70 |              loadMetadataCallback  // After metadata
 71 |              ) {
 72 |   // Call out to webgl loader.
 73 |   downloadModel(modelInfo.modelPath, modelInfo.name, loadMeshCallback,
 74 |                 loadModelCallback);
 75 | 
 76 |   // Load metadata.
 77 |   this.loadMetadata_(modelInfo.modelPath + modelInfo.metadataFile,
 78 |                      MODELS[modelInfo.name],
 79 |                      loadMetadataCallback);
 80 | };
 81 | 
 82 | o3v.ContentManager.prototype.loadMetadata_ = function(metadataPath,
 83 |                                                       modelMetadata,
 84 |                                                       callback) {
 85 |   var cached_metadata = this.metadataLoaded_[metadataPath];
 86 |   if (cached_metadata) {
 87 |     this.metadata_ = cached_metadata;
 88 |     callback();
 89 |   } else {
 90 |     var self = this;
 91 | 
 92 |     function onload(req) {
 93 |       // TODO: error handling.
 94 |       var metadata = new o3v.EntityMetadata(JSON.parse(req.responseText));
 95 |       self.metadata_ = new o3v.EntityModel(modelMetadata, metadata);
 96 |       self.metadataLoaded_[metadataPath] = this.metadata_;
 97 |       callback();
 98 |     };
 99 | 
100 |     getHttpRequest(metadataPath, onload);
101 |   }
102 | };
103 | 
104 | o3v.ContentManager.prototype.getMetadata = function() {
105 |   return this.metadata_;
106 | };
107 | 


--------------------------------------------------------------------------------
/web/scripts/gestures.js:
--------------------------------------------------------------------------------
 1 | // Copyright 2011 Google Inc. All Rights Reserved.
 2 | //
 3 | // Licensed under the Apache License, Version 2.0 (the "License");
 4 | // you may not use this file except in compliance with the License.
 5 | // You may obtain a copy of the License at
 6 | //
 7 | //     http://www.apache.org/licenses/LICENSE-2.0
 8 | //
 9 | // Unless required by applicable law or agreed to in writing, software
10 | // distributed under the License is distributed on an "AS IS" BASIS,
11 | // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12 | // See the License for the specific language governing permissions and
13 | // limitations under the License.
14 | 
15 | /**
16 |  * @fileoverview Platform-specific gestures for open-3d-viewer.
17 |  */
18 | 
19 | o3v.Gestures = function() {
20 |   this.isMac_ = navigator.platform &&
21 |                 (navigator.platform.indexOf('Mac') == 0);
22 | };
23 | 
24 | // Reports whether a click should be treated as a "hide" gesture.
25 | // On Windows and other non-Mac platforms, we use ctrl-click for hide. On Mac,
26 | // we use command-click, because ctrl-click brings up a context menu.
27 | o3v.Gestures.prototype.isHideClick = function(controlKeyDown, metaKeyDown) {
28 |   if (controlKeyDown && !this.isMac_) return true;
29 |   if (metaKeyDown && this.isMac_) return true;
30 |   return false;
31 | };


--------------------------------------------------------------------------------
/web/scripts/interpolant.js:
--------------------------------------------------------------------------------
  1 | // Copyright 2011 Google Inc. All Rights Reserved.
  2 | //
  3 | // Licensed under the Apache License, Version 2.0 (the "License");
  4 | // you may not use this file except in compliance with the License.
  5 | // You may obtain a copy of the License at
  6 | //
  7 | //     http://www.apache.org/licenses/LICENSE-2.0
  8 | //
  9 | // Unless required by applicable law or agreed to in writing, software
 10 | // distributed under the License is distributed on an "AS IS" BASIS,
 11 | // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 12 | // See the License for the specific language governing permissions and
 13 | // limitations under the License.
 14 | 
 15 | /**
 16 |  * @fileoverview JavaScript to for smooth interpolation.
 17 |  *
 18 |  */
 19 | 
 20 | /**
 21 |  * @param {number} value
 22 |  * @param {?Array} opt_registrar
 23 |  * @constructor
 24 |  */
 25 | o3v.Interpolant = function(value, opt_registrar, opt_constraint) {
 26 |   this.past_ = value;
 27 |   this.present_ = value;
 28 |   this.future_ = value;
 29 |   this.urgency_ = 0.25;
 30 |   this.constraint_ = opt_constraint;
 31 |   this.EPSILON = 0.001;
 32 | 
 33 |   if (opt_registrar) opt_registrar.push(this);
 34 | };
 35 | 
 36 | /**
 37 |  * @return {number}
 38 |  */
 39 | o3v.Interpolant.prototype.getPresent = function() {
 40 |   return this.present_;
 41 | };
 42 | 
 43 | /**
 44 |  * @return {number}
 45 |  */
 46 | o3v.Interpolant.prototype.getFuture = function() {
 47 |   return this.future_;
 48 | };
 49 | 
 50 | /**
 51 |  * @param {number} value
 52 |  * @param {?number} opt_urgency
 53 |  */
 54 | o3v.Interpolant.prototype.setFuture = function(value, opt_urgency) {
 55 |   this.future_ = value;
 56 |   if (opt_urgency) {
 57 |     this.urgency_ = opt_urgency;
 58 |   }
 59 | };
 60 | 
 61 | 
 62 | /**
 63 |  * @param {number} value
 64 |  */
 65 | o3v.Interpolant.prototype.reset = function(value) {
 66 |   this.past_ = value;
 67 |   this.present_ = value;
 68 |   this.future_ = value;
 69 | };
 70 | 
 71 | o3v.Interpolant.prototype.setFutureDelta = function(value, opt_urgency) {
 72 |   this.setFuture(this.future_ + value, opt_urgency);
 73 | }
 74 | 
 75 | /**
 76 |  * @return {boolean} needs update?
 77 |  */
 78 | o3v.Interpolant.prototype.tween = function() {
 79 |   var force_redraw = false;
 80 |   if (this.constraint_) {
 81 |     force_redraw = this.constraint_(this);
 82 |   }
 83 |   // TODO(wonchun): compose this logic into constraint_
 84 |   if (Math.abs(this.future_ - this.present_) < this.EPSILON) {
 85 |     this.past_ = this.future_;
 86 |     this.present_ = this.future_;
 87 |     return force_redraw;
 88 |   }
 89 |   var b = new goog.math.Bezier(this.past_, 0,
 90 |                                2*this.present_ - this.past_, 0,
 91 |                                2*this.future_ - this.present_, 0,
 92 |                                this.future_, 0);
 93 |   this.past_ = this.present_;
 94 |   this.present_ = b.getPoint(this.urgency_).x;
 95 |   return true;
 96 | };
 97 | 
 98 | /**
 99 |  * @return {boolean} needs update
100 |  */
101 | o3v.Interpolant.tweenAll = function(array) {
102 |   var ret = false;
103 |   array.forEach(function(i) { ret |= i.tween(); });
104 |   return ret;
105 | };
106 | 


--------------------------------------------------------------------------------
/web/scripts/layer.js:
--------------------------------------------------------------------------------
 1 | // Copyright 2011 Google Inc. All Rights Reserved.
 2 | //
 3 | // Licensed under the Apache License, Version 2.0 (the "License");
 4 | // you may not use this file except in compliance with the License.
 5 | // You may obtain a copy of the License at
 6 | //
 7 | //     http://www.apache.org/licenses/LICENSE-2.0
 8 | //
 9 | // Unless required by applicable law or agreed to in writing, software
10 | // distributed under the License is distributed on an "AS IS" BASIS,
11 | // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12 | // See the License for the specific language governing permissions and
13 | // limitations under the License.
14 | 
15 | /**
16 |  * @fileoverview Generic opacity slider manager - allows for multiple clients
17 |  *               to control the opacity of layers.
18 |  */
19 | o3v.LayerOpacityManager = function() {
20 |   // If not null, an array of opacities sorted by outside-first.
21 |   this.layerOpacities_ = null;
22 | 
23 |   // Functions to call on change.
24 |   this.callbacks = [];
25 | };
26 | 
27 | o3v.LayerOpacityManager.prototype.init = function(numLayers) {
28 |   this.layerOpacities_ = [];
29 |   for (var i = 0; i < numLayers; ++i) {
30 |     this.layerOpacities_.push(1.0);
31 |   }
32 | };
33 | 
34 | o3v.LayerOpacityManager.prototype.getLayerOpacities = function () {
35 |   return this.layerOpacities_;
36 | };
37 | 
38 | o3v.LayerOpacityManager.prototype.setLayerOpacity =
39 |     function (layer, value, from) {
40 |   this.layerOpacities_[layer] = value;
41 |   this.updateAllBut(from);
42 | };
43 | 
44 | o3v.LayerOpacityManager.prototype.setLayerOpacities = function(values, from) {
45 |   this.layerOpacities_ = values.slice(); // makes copy
46 |   this.updateAllBut(from);
47 | };
48 | 
49 | o3v.LayerOpacityManager.prototype.addView = function(callback) {
50 |   var numViews = this.callbacks.length;
51 |   for (var i = 0; i < numViews; ++i) {
52 |     if (this.callbacks[i] == callback) {
53 |       return;
54 |     }
55 |   }
56 |   this.callbacks.push(callback);
57 | };
58 | 
59 | o3v.LayerOpacityManager.prototype.updateAllBut = function (from) {
60 |   var numViews = this.callbacks.length;
61 |   for (var i = 0; i < numViews; ++i) {
62 |     var callback = this.callbacks[i];
63 |     if (callback != from) {
64 |       callback();
65 |     }
66 |   }
67 | };
68 | 


--------------------------------------------------------------------------------
/web/scripts/main_ui.js:
--------------------------------------------------------------------------------
 1 | // Copyright 2011 Google Inc. All Rights Reserved.
 2 | //
 3 | // Licensed under the Apache License, Version 2.0 (the "License");
 4 | // you may not use this file except in compliance with the License.
 5 | // You may obtain a copy of the License at
 6 | //
 7 | //     http://www.apache.org/licenses/LICENSE-2.0
 8 | //
 9 | // Unless required by applicable law or agreed to in writing, software
10 | // distributed under the License is distributed on an "AS IS" BASIS,
11 | // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12 | // See the License for the specific language governing permissions and
13 | // limitations under the License.
14 | 
15 | /**
16 |  * @fileoverview GUI elements of the page (buttons, slider, etc).
17 |  */
18 | 
19 | o3v.MainUI = function(nextModelCallback) {
20 | 
21 |   // Canvas.
22 |   $('<canvas>').appendTo('body').css({
23 |       'position': 'absolute',
24 |       'width': '100%',
25 |       'height': '100%',
26 |       'z-index': o3v.uiSettings.ZINDEX_VIEWER
27 |     }).attr('id', 'viewer');
28 |   this.canvas_ = $('#viewer')[0];
29 |   this.canvas_.onselectstart = function() {return false;};
30 |   this.canvas_.onmousedown = function() {return false;};
31 | 
32 |   // Logo.
33 |   $('<img src="img/logo.png">').appendTo('body').css({
34 |       'position': 'absolute',
35 |       'left': '8px',
36 |       'top': '10px',
37 |       'z-index': o3v.uiSettings.ZINDEX_MAINUI
38 |     }).click(function () {
39 |         this.navHandler(this.NAV_HOME);
40 |       });
41 | 
42 |   // Model selector.
43 |   this.modelBtn_ = $('<div>').appendTo('body').css({
44 |       'position': 'absolute',
45 |       'left': '17px',
46 |       'top': '219px',
47 |       'width': '45px',
48 |       'height': '50px',
49 |       'border-left': '2px solid #92e497',
50 |       'border-top-left-radius': '16px',
51 |       'border-top-right-radius': '16px',
52 |       'border-top': '2px solid #92e497',
53 |       'border-right': '2px solid #92e497',
54 |       'border-bottom': '1px solid #c2ffb7',
55 |       'background-position': 'center center',
56 |       'background-repeat': 'no-repeat',
57 |       'background-color': '#fff',
58 |       'z-index': o3v.uiSettings.ZINDEX_MAINUI
59 |     }).click(nextModelCallback);
60 | };
61 | 
62 | o3v.MainUI.prototype.setModelSelectorButton = function(iconFile) {
63 |   this.modelBtn_.css({
64 |     'background-image': 'url(' + iconFile + ')'
65 |     });
66 | };
67 | 
68 | o3v.MainUI.prototype.getCanvas = function() {
69 |   return this.canvas_;
70 | };
71 | 
72 | o3v.MainUI.prototype.showLoadingFeedback = function(show) {
73 |   document.getElementById('loading-feedback').style.visibility =
74 |     show ? 'visible' : 'hidden';
75 | };
76 | 
77 | o3v.MainUI.prototype.getLastButton = function() {
78 |   return this.modelBtn_.get(0);
79 | };
80 | 


--------------------------------------------------------------------------------
/web/scripts/models.js:
--------------------------------------------------------------------------------
 1 | // Copyright 2011 Google Inc. All Rights Reserved.
 2 | //
 3 | // Licensed under the Apache License, Version 2.0 (the "License");
 4 | // you may not use this file except in compliance with the License.
 5 | // You may obtain a copy of the License at
 6 | //
 7 | //     http://www.apache.org/licenses/LICENSE-2.0
 8 | //
 9 | // Unless required by applicable law or agreed to in writing, software
10 | // distributed under the License is distributed on an "AS IS" BASIS,
11 | // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12 | // See the License for the specific language governing permissions and
13 | // limitations under the License.
14 | 
15 | /**
16 |  * @fileoverview Information about the models that open-3d-viewer will display.
17 |  */
18 | 
19 | /* ====================================================================== */
20 | /*                        ADD YOUR MODELS HERE                            */
21 | /* ====================================================================== */
22 | 
23 | //o3v.MODELS = [
24 | //  /*{
25 | //      name: 'tumor_astrocyte_soma_process.obj',
26 | //      scriptName: 'tumor_astrocyte_soma_process.js',
27 | //      modelPath: 'models/astro/',
28 | //      metadataFile: 'entity_metadata.json',
29 | //      texturePath: 'models/common/',
30 | //      numLayers: 3
31 | //  },
32 | //  {
33 | //    name: 'cell03_def.obj',
34 | //    scriptName: 'beta_cell.js',
35 | //    modelPath: 'models/beta_cell/',
36 | //    metadataFile: 'entity_metadata.json',
37 | //    texturePath: 'models/common/',
38 | //    numLayers: 5
39 | //  },*/
40 | //  /*{
41 | //    name: 'Bessie.obj',
42 | //    scriptName: 'cow_anatomy.js',
43 | //    modelPath: 'models/cow_anatomy/',
44 | //    metadataFile: 'entity_metadata.json',
45 | //    texturePath: 'models/common/',
46 | //    numLayers: 5
47 | //  },*/
48 | //];
49 | 


--------------------------------------------------------------------------------
/web/scripts/nav_ui.js:
--------------------------------------------------------------------------------
  1 | // Copyright 2011 Google Inc. All Rights Reserved.
  2 | //
  3 | // Licensed under the Apache License, Version 2.0 (the "License");
  4 | // you may not use this file except in compliance with the License.
  5 | // You may obtain a copy of the License at
  6 | //
  7 | //     http://www.apache.org/licenses/LICENSE-2.0
  8 | //
  9 | // Unless required by applicable law or agreed to in writing, software
 10 | // distributed under the License is distributed on an "AS IS" BASIS,
 11 | // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 12 | // See the License for the specific language governing permissions and
 13 | // limitations under the License.
 14 | 
 15 | /**
 16 |  * @fileoverview Navigational controls for main UI of open-3d-viewer.
 17 |  */
 18 | o3v.navUI = function(reset, move, zoom) {
 19 |   homeBtn = null;
 20 |   upBtn = null;
 21 |   leftBtn = null;
 22 |   rightBtn = null;
 23 |   downBtn = null;
 24 |   zoomIn = null;
 25 |   zoomOut = null;
 26 | 
 27 |   this.reset_ = reset;
 28 |   this.move_ = move;
 29 |   this.zoom_ = zoom;
 30 | 
 31 |   var navBtnStyles = {
 32 |     'position': 'absolute',
 33 |     'width': '20px',
 34 |     'height': '20px',
 35 |     'z-index': o3v.uiSettings.ZINDEX_MAINUI
 36 |   };
 37 | 
 38 |   this.navHome = $('<div>').appendTo('body').css(navBtnStyles).css({
 39 |       'left': '30px',
 40 |       'top': '84px'
 41 |     }).button({
 42 |      icons: {
 43 |        primary: 'ui-icon-home'
 44 |      },
 45 |      text: false
 46 |       }).click(function () {
 47 |           this.reset_();
 48 |         }.bind(this));
 49 |   var homeEl = this.navHome.get(0);
 50 |   this.navUp = $('<div>').appendTo('body').css(navBtnStyles).button({
 51 |    icons: {
 52 |      primary: 'ui-icon-triangle-1-n'
 53 |    },
 54 |    text: false
 55 |     }).position({
 56 |      my: 'bottom',
 57 |      at: 'top',
 58 |      of: homeEl,
 59 |      collision: 'none'
 60 |       }).click(function () {
 61 |           this.move_(0, -o3v.navUI.MOVE_FACTOR);
 62 |         }.bind(this));
 63 |   this.navLeft = $('<div>').appendTo('body').css(navBtnStyles).button({
 64 |    icons: {
 65 |      primary: 'ui-icon-triangle-1-w'
 66 |    },
 67 |    text: false
 68 |     }).position({
 69 |      my: 'right',
 70 |      at: 'left',
 71 |      of: homeEl,
 72 |      collision: 'none'
 73 |       }).click(function () {
 74 |           this.move_(-o3v.navUI.MOVE_FACTOR, 0);
 75 |         }.bind(this));
 76 |   this.navRight = $('<div>').appendTo('body').css(navBtnStyles).button({
 77 |    icons: {
 78 |      primary: 'ui-icon-triangle-1-e'
 79 |    },
 80 |    text: false
 81 |     }).position({
 82 |      my: 'left',
 83 |      at: 'right',
 84 |      of: homeEl,
 85 |      collision: 'none'
 86 |       }).click(function () {
 87 |           this.move_(o3v.navUI.MOVE_FACTOR, 0);
 88 |         }.bind(this));
 89 |   this.navDown = $('<div>').appendTo('body').css(navBtnStyles).button({
 90 |    icons: {
 91 |      primary: 'ui-icon-triangle-1-s'
 92 |    },
 93 |    text: false
 94 |     }).position({
 95 |      my: 'top',
 96 |      at: 'bottom',
 97 |      of: homeEl,
 98 |      collision: 'none'
 99 |       }).click(function () {
100 |           this.move_(0, o3v.navUI.MOVE_FACTOR);
101 |         }.bind(this));
102 |   this.navZoomIn = $('<div>').appendTo('body').css(navBtnStyles).button({
103 |    icons: {
104 |      primary: 'ui-icon-plus'
105 |    },
106 |    text: false
107 |     }).position({
108 |      my: 'top',
109 |      at: 'bottom',
110 |      of: this.navDown.get(0),
111 |      offset: '0 16',
112 |      collision: 'none'
113 |       }).click(function () {
114 |           this.zoom_(0, o3v.navUI.ZOOM_FACTOR);
115 |         }.bind(this));
116 |   this.navZoomOut = $('<div>').appendTo('body').css(navBtnStyles).button({
117 |    icons: {
118 |      primary: 'ui-icon-minus'
119 |    },
120 |    text: false
121 |     }).position({
122 |      my: 'top',
123 |      at: 'bottom',
124 |      of: this.navZoomIn.get(0),
125 |      collision: 'none'
126 |       }).click(function () {
127 |           this.zoom_(0, -o3v.navUI.ZOOM_FACTOR);
128 |         }.bind(this));
129 | };
130 | 
131 | o3v.navUI.MOVE_FACTOR = 10;
132 | o3v.navUI.ZOOM_FACTOR = 50;
133 | 


--------------------------------------------------------------------------------
/web/scripts/render_interface.js:
--------------------------------------------------------------------------------
  1 | // Copyright 2011 Google Inc. All Rights Reserved.
  2 | 
  3 | /**
  4 |  * @fileoverview Description of this file.
  5 |  * @author dkogan@google.com (David Kogan)
  6 |  */
  7 | // Copyright 2011 Google Inc. All Rights Reserved.
  8 | //
  9 | // Licensed under the Apache License, Version 2.0 (the "License");
 10 | // you may not use this file except in compliance with the License.
 11 | // You may obtain a copy of the License at
 12 | //
 13 | //     http://www.apache.org/licenses/LICENSE-2.0
 14 | //
 15 | // Unless required by applicable law or agreed to in writing, software
 16 | // distributed under the License is distributed on an "AS IS" BASIS,
 17 | // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 18 | // See the License for the specific language governing permissions and
 19 | // limitations under the License.
 20 | 
 21 | o3v.RenderInterface = function(canvas, opacityManager, contentManager) {
 22 |   this.renderer_ = new Renderer(canvas, this.textureFromMaterial_.bind(this));
 23 | 
 24 |   this.opacityManager_ = opacityManager;
 25 |   this.contentManager_ = contentManager;
 26 | 
 27 |   this.pendingRefresh_ = 0;  // If refresh is waiting, this is its timeout.
 28 |   this.REFRESH_WAIT_ = 10;  // Wait 10ms between refresh retries.
 29 | 
 30 |   this.reset();
 31 | };
 32 | 
 33 | o3v.RenderInterface.prototype.textureFromMaterial_ = function(
 34 |     gl, material, callback) {
 35 |   var modelInfo = this.contentManager_.getCurrentModelInfo();
 36 |   var texturePath = modelInfo.texturePath;
 37 |   // TODO(dkogan|wonchun): MODELS should probably not be a global variable.
 38 |   var materials = MODELS[modelInfo.name].materials;
 39 |   try {
 40 |     var url = materials[material].map_Kd;  // throw-y.
 41 |     if (url === undefined) {
 42 |       throw url;
 43 |     }
 44 |     return textureFromUrl(gl, texturePath + url, callback);
 45 |   } catch (e) {
 46 |     var color;
 47 |     try {
 48 |       color = new Uint8Array(materials[material].Kd);
 49 |     } catch (e) {
 50 |       color = new Uint8Array([255, 255, 255]);
 51 |     }
 52 |     var texture = textureFromArray(gl, 1, 1, color);
 53 |     callback(gl, texture);
 54 |     return texture;
 55 |   }
 56 | }
 57 | 
 58 | 
 59 | o3v.RenderInterface.prototype.handleResize = function() {
 60 |   this.renderer_.handleResize();
 61 | };
 62 | 
 63 | o3v.RenderInterface.prototype.onMeshLoad =
 64 |     function(attribArray, indexArray, bboxes, meshEntry) {
 65 | 
 66 |   this.renderer_.onMeshLoad(attribArray, indexArray, bboxes, meshEntry);
 67 | 
 68 |   // Update bbox info.
 69 |   for (var i = 0; i < meshEntry.names.length; i++) {
 70 |     var bbox = [bboxes[i*6 + 0], bboxes[i*6 + 1], bboxes[i*6 + 2],
 71 |                 bboxes[i*6 + 3], bboxes[i*6 + 4], bboxes[i*6 + 5]];
 72 |     this.bboxes_[meshEntry.names[i]] = bbox;
 73 |   }
 74 | };
 75 | 
 76 | o3v.RenderInterface.prototype.onModelLoad = function() {
 77 |   this.renderer_.updateMeshInfo();
 78 | };
 79 | 
 80 | o3v.RenderInterface.prototype.reset = function() {
 81 |   this.renderer_.reset();
 82 |   this.bboxes_ = {};
 83 |   window.clearTimeout(this.pendingRefresh_);
 84 | };
 85 | 
 86 | o3v.RenderInterface.prototype.getBboxes = function() {
 87 |   return this.bboxes_;
 88 | };
 89 | 
 90 | o3v.RenderInterface.prototype.refresh = function(camera) {
 91 |   if (this.pendingRefresh_) {
 92 |     window.clearTimeout(this.pendingRefresh_);
 93 |     this.pendingRefresh_ = 0;
 94 |   }
 95 |   if (this.renderer_.ready()) {
 96 |     // Update opacity info.
 97 |     this.renderer_.updateOpacity(this.opacityManager_.getOpacityInfo());
 98 | 
 99 |     // Send refresh request.
100 |     this.renderer_.postRedisplayWithCamera(camera);
101 |   } else {
102 |     this.pendingRefresh_ = window.setTimeout(
103 |         function() {
104 |           this.refresh(camera);
105 |         }.bind(this), this.REFRESH_WAIT_);
106 |   }
107 | };
108 | 
109 | o3v.RenderInterface.prototype.getViewportCoords = function(renderCoords) {
110 |   return this.renderer_.getViewportCoords(renderCoords);
111 | };
112 | 
113 | o3v.RenderInterface.prototype.identify = function(left, top) {
114 |   // Set to int-valued opacities.
115 |   this.renderer_.updateOpacity(this.opacityManager_.getOpacityInfo(true));
116 |   return this.renderer_.identify(left, top);
117 |   this.renderer_.updateOpacity(this.opacityManager_.getOpacityInfo());
118 | };
119 | 
120 | o3v.RenderInterface.prototype.toggleColored = function() {
121 |   this.renderer_.toggleColored();
122 | };
123 | 


--------------------------------------------------------------------------------
/web/scripts/search.js:
--------------------------------------------------------------------------------
 1 | // Copyright 2011 Google Inc. All Rights Reserved.
 2 | //
 3 | // Licensed under the Apache License, Version 2.0 (the "License");
 4 | // you may not use this file except in compliance with the License.
 5 | // You may obtain a copy of the License at
 6 | //
 7 | //     http://www.apache.org/licenses/LICENSE-2.0
 8 | //
 9 | // Unless required by applicable law or agreed to in writing, software
10 | // distributed under the License is distributed on an "AS IS" BASIS,
11 | // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12 | // See the License for the specific language governing permissions and
13 | // limitations under the License.
14 | 
15 | /**
16 |  * @fileoverview Search.
17 |  */
18 | 
19 | o3v.Search = function(selectCallback) {
20 |   this.selectCallback_ = selectCallback;
21 | 
22 |   this.searchbox_ = $('<input class="ui-widget">').appendTo('body').css({
23 |       'position': 'absolute',
24 |       'left': '100%',
25 |       'top': '8px',
26 |       'width': '200px',
27 |       'margin-left': '-230px',
28 |       'outline-style': 'none',
29 |       'border': '2px solid #92e497',
30 |       'border-radius': '12px',
31 |       'padding': '2px 8px 2px 8px',
32 |       'opacity': 0.8,
33 |       'z-index': o3v.uiSettings.ZINDEX_MAINUI
34 |     });
35 | };
36 | 
37 | o3v.Search.prototype.reset = function(searchTokens) {
38 |   this.searchbox_.autocomplete('destroy');
39 |   this.terms_ = searchTokens;
40 |   this.searchbox_.autocomplete(
41 |       {
42 |           source: this.find.bind(this),
43 |           delay: 0,
44 |           autoFocus: true,
45 |           selectFirst: true,
46 |           select: function(event, ui) {
47 |             this.handleResult_.bind(event, ui);
48 |             this.searchbox_[0].blur();
49 |           }.bind(this),
50 |           focus: this.handleResult_.bind(this)
51 |       });
52 | };
53 | 
54 | o3v.Search.prototype.find = function(query, callback) {
55 |   var token = query.term;
56 | 
57 |   var matches = [];
58 |   if (token != '') {
59 |     var matcher = new RegExp('(^|\\W+)' + token, 'i');
60 | 
61 |     for (var i = 0; i < this.terms_.length; i++) {
62 |       if (this.terms_[i].match(matcher)) {
63 |         matches.push(this.terms_[i]);
64 |         if (matches.length >= o3v.Search.MAX_MATCHES) {
65 |           break;
66 |         }
67 |       }
68 |     }
69 |   }
70 |   callback(matches);
71 | };
72 | 
73 | o3v.Search.prototype.handleResult_ = function(event, ui) {
74 |   this.selectCallback_(ui.item.value);
75 | };
76 | 
77 | o3v.Search.MAX_MATCHES = 10;
78 | 


--------------------------------------------------------------------------------
/web/scripts/shaders.txt:
--------------------------------------------------------------------------------
 1 | /** shader_fragment **/
 2 | 
 3 | #ifdef GL_ES
 4 | precision mediump float;
 5 | #endif
 6 | 
 7 | uniform sampler2D u_texture;
 8 | uniform float u_opacity;
 9 | 
10 | varying vec3 v_normal;
11 | varying vec2 v_texcoord;
12 | 
13 | const vec3 kLightVector = vec3(0.3, 0.3, -0.9);
14 | const vec3 kHalfVector = vec3(0.154, 0.154, -0.974);
15 | 
16 | void main(void) {
17 |     vec3 normal = normalize(v_normal);
18 |     // half-Lambert lighting.
19 |     float light = 0.5 + 0.5*dot(normal, kLightVector);
20 |     float diffuse = light*u_opacity;
21 |     // Specular with fake fresnel effect.
22 |     float specular = max(0.0, dot(normal, kHalfVector));
23 |     specular *= 0.7 + 0.3*normal.z;
24 |     specular *= specular;
25 |     specular *= u_opacity;
26 |     vec3 fetch = texture2D(u_texture, v_texcoord).rgb;
27 |     gl_FragData[0] = vec4(diffuse*fetch + vec3(specular), u_opacity);
28 | }
29 | 
30 | /** shader_fragment_id **/
31 | 
32 | precision highp float;
33 | varying vec4 v_color;
34 | void main() {
35 |   gl_FragColor = v_color;
36 | }
37 | 
38 | /** shader_vertex **/
39 | 
40 | uniform mat4 u_mvp;
41 | 
42 | attribute vec3 a_position;
43 | attribute vec2 a_texcoord;
44 | attribute vec3 a_normal;
45 | 
46 | varying vec2 v_texcoord;
47 | varying vec3 v_normal;
48 | 
49 | void main(void) {
50 |   v_normal    = vec3(u_mvp * vec4(a_normal, 0));
51 |   v_texcoord  = a_texcoord;
52 |   gl_Position = u_mvp * vec4(a_position, 1.0);
53 | }
54 | 
55 | /** shader_vertex_id **/
56 | 
57 | uniform mat4 u_mvp;
58 | uniform float u_colorScale;
59 | 
60 | attribute vec3 a_position;
61 | attribute vec3 a_normal;
62 | attribute float a_colorIndex;
63 | 
64 | varying vec4 v_color;
65 | varying vec3 v_normal;
66 | 
67 | void main() {
68 |   float scaledColor = a_colorIndex * u_colorScale;
69 |   float redColor = floor(scaledColor / (256.0 * 256.0));
70 |   float greenColor = floor((scaledColor - redColor * 256.0 * 256.0) / 256.0);
71 |   float blueColor = (scaledColor - greenColor * 256.0 - redColor * 256.0 * 256.0);
72 |   v_color = vec4(redColor / 255.0, greenColor / 255.0, blueColor / 255.0, 1);
73 |   v_normal = vec3(u_mvp * vec4(a_normal, 0));
74 |   gl_Position = u_mvp * vec4(a_position, 1.0);
75 | }
76 | 


--------------------------------------------------------------------------------
/web/scripts/webgl_util.js:
--------------------------------------------------------------------------------
 1 | // Copyright 2011 Google Inc. All Rights Reserved.
 2 | //
 3 | // Licensed under the Apache License, Version 2.0 (the "License");
 4 | // you may not use this file except in compliance with the License.
 5 | // You may obtain a copy of the License at
 6 | //
 7 | //     http://www.apache.org/licenses/LICENSE-2.0
 8 | //
 9 | // Unless required by applicable law or agreed to in writing, software
10 | // distributed under the License is distributed on an "AS IS" BASIS,
11 | // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12 | // See the License for the specific language governing permissions and
13 | // limitations under the License.
14 | 
15 | /**
16 |  * @fileoverview WebGL utility functions
17 |  */
18 | o3v.webGLUtil = {
19 |   /**
20 |    * Tests whether the browser supports WebGL.
21 |    * @param {Element} canvasEl A canvas element in the current document.
22 |    * @return {boolean} True iff browser supports WebGL.
23 |    */
24 |   browserSupportsWebGL: function (canvasEl) {
25 |     try {
26 |       if (!canvasEl) {
27 |         return false;
28 |       }
29 |       if (!window.WebGLRenderingContext) {
30 |         return false;
31 |       }
32 |       var gl = canvasEl.getContext('webgl');
33 |       if (!gl) {
34 |         gl = canvasEl.getContext('experimental-webgl');
35 |       }
36 |       if (!gl) {
37 |         return false;
38 |       }
39 |       return true;
40 |     } catch (err) {
41 |       return false;
42 |     }
43 |   }
44 | };
45 | 


--------------------------------------------------------------------------------