├── .gitignore ├── AmpliconResources.md ├── LICENSE.md ├── README.md ├── dada2 └── dada2_analyze.R ├── ecostats ├── ecostats.R ├── mouse_ps.rds └── mouse_ps_filt.rds ├── mothur └── mothur_process.txt └── qiime2 ├── mg-metadata.tsv └── qiime2_process.txt /.gitignore: -------------------------------------------------------------------------------- 1 | 2 | .DS_Store 3 | 4 | *.zip 5 | 6 | dada2/train/ 7 | -------------------------------------------------------------------------------- /AmpliconResources.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/smdabdoub/MicrobiomeInformaticsWebinarWeek3/HEAD/AmpliconResources.md -------------------------------------------------------------------------------- /LICENSE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/smdabdoub/MicrobiomeInformaticsWebinarWeek3/HEAD/LICENSE.md -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/smdabdoub/MicrobiomeInformaticsWebinarWeek3/HEAD/README.md -------------------------------------------------------------------------------- /dada2/dada2_analyze.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/smdabdoub/MicrobiomeInformaticsWebinarWeek3/HEAD/dada2/dada2_analyze.R -------------------------------------------------------------------------------- /ecostats/ecostats.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/smdabdoub/MicrobiomeInformaticsWebinarWeek3/HEAD/ecostats/ecostats.R -------------------------------------------------------------------------------- /ecostats/mouse_ps.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/smdabdoub/MicrobiomeInformaticsWebinarWeek3/HEAD/ecostats/mouse_ps.rds -------------------------------------------------------------------------------- /ecostats/mouse_ps_filt.rds: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/smdabdoub/MicrobiomeInformaticsWebinarWeek3/HEAD/ecostats/mouse_ps_filt.rds -------------------------------------------------------------------------------- /mothur/mothur_process.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/smdabdoub/MicrobiomeInformaticsWebinarWeek3/HEAD/mothur/mothur_process.txt -------------------------------------------------------------------------------- /qiime2/mg-metadata.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/smdabdoub/MicrobiomeInformaticsWebinarWeek3/HEAD/qiime2/mg-metadata.tsv -------------------------------------------------------------------------------- /qiime2/qiime2_process.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/smdabdoub/MicrobiomeInformaticsWebinarWeek3/HEAD/qiime2/qiime2_process.txt --------------------------------------------------------------------------------