├── .gitignore ├── LICENSE ├── README.md ├── cookiecutter.json └── {{ cookiecutter.repo_name }} ├── .editorconfig ├── .gitattributes ├── .github └── workflows │ └── main.yaml ├── .gitignore ├── LICENSE ├── README.md ├── config ├── config.yaml └── samples.tsv ├── resources └── README.md ├── results ├── README.md ├── logs │ └── .gitignore ├── plots │ └── .gitignore └── tables │ └── .gitignore └── workflow ├── Snakefile ├── envs └── myenv.yaml ├── report ├── some-plot.rst └── workflow.rst ├── rules ├── common.smk └── other.smk ├── schemas ├── config.schema.yaml └── samples.schema.yaml └── scripts └── common.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snakemake-workflows/cookiecutter-snakemake-workflow/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 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