├── .gitignore ├── LICENSE ├── MANIFEST.in ├── README.md ├── demo ├── data_tutorial.ipynb ├── model_tutorial.ipynb ├── tutorial_inference_Norman.ipynb ├── tutorial_plot_top20_DE.ipynb └── tutorial_uncertainty.ipynb ├── gears ├── __init__.py ├── data_utils.py ├── gears.py ├── inference.py ├── model.py ├── pertdata.py ├── utils.py └── version.py ├── img └── gears.png ├── requirements.txt ├── setup.cfg └── setup.py /.gitignore: -------------------------------------------------------------------------------- 1 | .ipynb_checkpoints 2 | .DS_Store 3 | __pycache__/ 4 | data/ 5 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/GEARS/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/GEARS/HEAD/MANIFEST.in -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/GEARS/HEAD/README.md -------------------------------------------------------------------------------- /demo/data_tutorial.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/GEARS/HEAD/demo/data_tutorial.ipynb -------------------------------------------------------------------------------- /demo/model_tutorial.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/GEARS/HEAD/demo/model_tutorial.ipynb -------------------------------------------------------------------------------- /demo/tutorial_inference_Norman.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/GEARS/HEAD/demo/tutorial_inference_Norman.ipynb -------------------------------------------------------------------------------- /demo/tutorial_plot_top20_DE.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/GEARS/HEAD/demo/tutorial_plot_top20_DE.ipynb -------------------------------------------------------------------------------- /demo/tutorial_uncertainty.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/GEARS/HEAD/demo/tutorial_uncertainty.ipynb -------------------------------------------------------------------------------- /gears/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/GEARS/HEAD/gears/__init__.py -------------------------------------------------------------------------------- /gears/data_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/GEARS/HEAD/gears/data_utils.py -------------------------------------------------------------------------------- /gears/gears.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/GEARS/HEAD/gears/gears.py -------------------------------------------------------------------------------- /gears/inference.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/GEARS/HEAD/gears/inference.py -------------------------------------------------------------------------------- /gears/model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/GEARS/HEAD/gears/model.py -------------------------------------------------------------------------------- /gears/pertdata.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/GEARS/HEAD/gears/pertdata.py -------------------------------------------------------------------------------- /gears/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/GEARS/HEAD/gears/utils.py -------------------------------------------------------------------------------- /gears/version.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/GEARS/HEAD/gears/version.py -------------------------------------------------------------------------------- /img/gears.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/GEARS/HEAD/img/gears.png -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/GEARS/HEAD/requirements.txt -------------------------------------------------------------------------------- /setup.cfg: -------------------------------------------------------------------------------- 1 | [metadata] 2 | description-file = README.md -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/GEARS/HEAD/setup.py --------------------------------------------------------------------------------