├── LICENSE ├── README.md ├── __init__.py ├── diff_prof ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-35.pyc │ ├── __init__.cpython-37.pyc │ ├── diffusion_profiles.cpython-35.pyc │ └── diffusion_profiles.cpython-37.pyc └── diffusion_profiles.py ├── img ├── Overview.png └── __init__.py ├── main.ipynb ├── msi ├── ._node2node.py ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-35.pyc │ ├── __init__.cpython-37.pyc │ ├── drug_to_protein.cpython-35.pyc │ ├── drug_to_protein.cpython-36.pyc │ ├── drug_to_protein.cpython-37.pyc │ ├── functional_pathway_to_functional_pathway.cpython-35.pyc │ ├── functional_pathway_to_functional_pathway.cpython-36.pyc │ ├── functional_pathway_to_functional_pathway.cpython-37.pyc │ ├── indication_to_protein.cpython-35.pyc │ ├── indication_to_protein.cpython-36.pyc │ ├── indication_to_protein.cpython-37.pyc │ ├── msi.cpython-35.pyc │ ├── msi.cpython-37.pyc │ ├── node_to_node.cpython-35.pyc │ ├── node_to_node.cpython-36.pyc │ ├── node_to_node.cpython-37.pyc │ ├── protein_to_functional_pathway.cpython-35.pyc │ ├── protein_to_functional_pathway.cpython-36.pyc │ ├── protein_to_functional_pathway.cpython-37.pyc │ ├── protein_to_protein.cpython-35.pyc │ ├── protein_to_protein.cpython-36.pyc │ └── protein_to_protein.cpython-37.pyc ├── biological_function_to_biological_function.py ├── drug_to_protein.py ├── indication_to_protein.py ├── msi.py ├── node_to_node.py ├── protein_to_biological_function.py └── protein_to_protein.py ├── requirements.txt ├── results └── __init__.py └── tests ├── __init__.py ├── __pycache__ ├── __init__.cpython-35.pyc ├── __init__.cpython-37.pyc ├── diff_prof.cpython-35.pyc ├── diff_prof.cpython-37.pyc ├── msi.cpython-35.pyc └── msi.cpython-37.pyc ├── diff_prof.py └── msi.py /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/README.md -------------------------------------------------------------------------------- /__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/__init__.py -------------------------------------------------------------------------------- /diff_prof/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /diff_prof/__pycache__/__init__.cpython-35.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/diff_prof/__pycache__/__init__.cpython-35.pyc -------------------------------------------------------------------------------- /diff_prof/__pycache__/__init__.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/diff_prof/__pycache__/__init__.cpython-37.pyc -------------------------------------------------------------------------------- /diff_prof/__pycache__/diffusion_profiles.cpython-35.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/diff_prof/__pycache__/diffusion_profiles.cpython-35.pyc -------------------------------------------------------------------------------- /diff_prof/__pycache__/diffusion_profiles.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/diff_prof/__pycache__/diffusion_profiles.cpython-37.pyc -------------------------------------------------------------------------------- /diff_prof/diffusion_profiles.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/diff_prof/diffusion_profiles.py -------------------------------------------------------------------------------- /img/Overview.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/img/Overview.png -------------------------------------------------------------------------------- /img/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /main.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/main.ipynb -------------------------------------------------------------------------------- /msi/._node2node.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/._node2node.py -------------------------------------------------------------------------------- /msi/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /msi/__pycache__/__init__.cpython-35.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/__init__.cpython-35.pyc -------------------------------------------------------------------------------- /msi/__pycache__/__init__.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/__init__.cpython-37.pyc -------------------------------------------------------------------------------- /msi/__pycache__/drug_to_protein.cpython-35.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/drug_to_protein.cpython-35.pyc -------------------------------------------------------------------------------- /msi/__pycache__/drug_to_protein.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/drug_to_protein.cpython-36.pyc -------------------------------------------------------------------------------- /msi/__pycache__/drug_to_protein.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/drug_to_protein.cpython-37.pyc -------------------------------------------------------------------------------- /msi/__pycache__/functional_pathway_to_functional_pathway.cpython-35.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/functional_pathway_to_functional_pathway.cpython-35.pyc -------------------------------------------------------------------------------- /msi/__pycache__/functional_pathway_to_functional_pathway.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/functional_pathway_to_functional_pathway.cpython-36.pyc -------------------------------------------------------------------------------- /msi/__pycache__/functional_pathway_to_functional_pathway.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/functional_pathway_to_functional_pathway.cpython-37.pyc -------------------------------------------------------------------------------- /msi/__pycache__/indication_to_protein.cpython-35.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/indication_to_protein.cpython-35.pyc -------------------------------------------------------------------------------- /msi/__pycache__/indication_to_protein.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/indication_to_protein.cpython-36.pyc -------------------------------------------------------------------------------- /msi/__pycache__/indication_to_protein.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/indication_to_protein.cpython-37.pyc -------------------------------------------------------------------------------- /msi/__pycache__/msi.cpython-35.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/msi.cpython-35.pyc -------------------------------------------------------------------------------- /msi/__pycache__/msi.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/msi.cpython-37.pyc -------------------------------------------------------------------------------- /msi/__pycache__/node_to_node.cpython-35.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/node_to_node.cpython-35.pyc -------------------------------------------------------------------------------- /msi/__pycache__/node_to_node.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/node_to_node.cpython-36.pyc -------------------------------------------------------------------------------- /msi/__pycache__/node_to_node.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/node_to_node.cpython-37.pyc -------------------------------------------------------------------------------- /msi/__pycache__/protein_to_functional_pathway.cpython-35.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/protein_to_functional_pathway.cpython-35.pyc -------------------------------------------------------------------------------- /msi/__pycache__/protein_to_functional_pathway.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/protein_to_functional_pathway.cpython-36.pyc -------------------------------------------------------------------------------- /msi/__pycache__/protein_to_functional_pathway.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/protein_to_functional_pathway.cpython-37.pyc -------------------------------------------------------------------------------- /msi/__pycache__/protein_to_protein.cpython-35.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/protein_to_protein.cpython-35.pyc -------------------------------------------------------------------------------- /msi/__pycache__/protein_to_protein.cpython-36.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/protein_to_protein.cpython-36.pyc -------------------------------------------------------------------------------- /msi/__pycache__/protein_to_protein.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/__pycache__/protein_to_protein.cpython-37.pyc -------------------------------------------------------------------------------- /msi/biological_function_to_biological_function.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/biological_function_to_biological_function.py -------------------------------------------------------------------------------- /msi/drug_to_protein.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/drug_to_protein.py -------------------------------------------------------------------------------- /msi/indication_to_protein.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/indication_to_protein.py -------------------------------------------------------------------------------- /msi/msi.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/msi.py -------------------------------------------------------------------------------- /msi/node_to_node.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/node_to_node.py -------------------------------------------------------------------------------- /msi/protein_to_biological_function.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/protein_to_biological_function.py -------------------------------------------------------------------------------- /msi/protein_to_protein.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/msi/protein_to_protein.py -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/requirements.txt -------------------------------------------------------------------------------- /results/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /tests/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /tests/__pycache__/__init__.cpython-35.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/tests/__pycache__/__init__.cpython-35.pyc -------------------------------------------------------------------------------- /tests/__pycache__/__init__.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/tests/__pycache__/__init__.cpython-37.pyc -------------------------------------------------------------------------------- /tests/__pycache__/diff_prof.cpython-35.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/tests/__pycache__/diff_prof.cpython-35.pyc -------------------------------------------------------------------------------- /tests/__pycache__/diff_prof.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/tests/__pycache__/diff_prof.cpython-37.pyc -------------------------------------------------------------------------------- /tests/__pycache__/msi.cpython-35.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/tests/__pycache__/msi.cpython-35.pyc -------------------------------------------------------------------------------- /tests/__pycache__/msi.cpython-37.pyc: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/tests/__pycache__/msi.cpython-37.pyc -------------------------------------------------------------------------------- /tests/diff_prof.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/tests/diff_prof.py -------------------------------------------------------------------------------- /tests/msi.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/snap-stanford/multiscale-interactome/HEAD/tests/msi.py --------------------------------------------------------------------------------