├── .coveragerc ├── .github └── workflows │ ├── python-package.yml │ └── python-publish.yml ├── .gitignore ├── .readthedocs.yml ├── CHANGES.md ├── LICENSE ├── README.md ├── docs ├── Makefile ├── _common_issues.rst ├── _cosmic_ray_removal.rst ├── _extraction_methods.rst ├── _file_prefixes.rst ├── _file_suffixes.rst ├── _flat_normalization.rst ├── _install_dcr.rst ├── _observing.rst ├── _running_new_keywords.rst ├── _running_prepare_data_for_reduction.rst ├── _running_redastrometry.rst ├── _running_redccd.rst ├── _running_redphotometry.rst ├── _running_redspec.rst ├── _shortcuts.rst ├── _static │ ├── cvso166_400m2_gg455_2.png │ ├── cvso2016_Ha_auto_wl_solution2.png │ ├── cvso2016_Ha_auto_wl_solution_1.png │ ├── cvso2016_Ha_auto_wl_solution_3.png │ ├── eg21_1200M5_GG455.png │ ├── lamp1D_example.png │ ├── lst │ ├── realvnc.png │ ├── realvnc1.png │ ├── realvnc_login.png │ ├── reminavnc.png │ ├── screenshot_1.png │ ├── soar_logo.png │ ├── soardata3-terminal.png │ └── std_dev_Ha_automated_solution_GSPEC_2018-03-22.png ├── _templates │ └── footer.html ├── _working_with_virtualenv.rst ├── acknowledgement.rst ├── api │ ├── goodman_pipeline.core.rst │ ├── goodman_pipeline.images.rst │ ├── goodman_pipeline.rst │ ├── goodman_pipeline.spectroscopy.rst │ ├── goodman_pipeline.wcs.rst │ └── modules.rst ├── authors.rst ├── change_history.rst ├── conf.py ├── index.rst ├── install.rst ├── license.rst ├── overview.rst ├── question_and_answers.rst └── usage.rst ├── environment.yml └── goodman_pipeline ├── __init__.py ├── astrometry ├── __init__.py ├── astrometry.py └── utils.py ├── core ├── __init__.py ├── check_version.py ├── core.py └── tests │ ├── __init__.py │ ├── test_ccdproc.py │ ├── test_check_version.py │ └── test_core.py └── data ├── dcr_source ├── README.md └── dcr │ ├── dcr.c │ ├── dcr.h │ ├── dcr.par │ ├── makefile │ ├── pfitshead.c │ ├── pfitshead.h │ ├── pfitsin.c │ ├── pfitsin.h │ ├── pfitsio.c │ ├── pfitsio.h │ ├── swap.c │ └── swap.h ├── nist_list ├── nist_air_strong_lines_Ar.txt ├── nist_air_strong_lines_Cu.txt ├── nist_air_strong_lines_Fe.txt ├── nist_air_strong_lines_He.txt ├── nist_air_strong_lines_Hg.txt └── nist_air_strong_lines_Ne.txt ├── params ├── config.json ├── config_example.json ├── dcr.par └── param.json └── ref_comp ├── goodman_comp_1200M1_Ar.fits ├── goodman_comp_1200M1_CuHeAr.fits ├── goodman_comp_1200M1_FeHeAr.fits ├── goodman_comp_1200M2_CuHeAr.fits ├── goodman_comp_1200M2_FeHeAr.fits ├── goodman_comp_1200M3_CuHeAr.fits ├── goodman_comp_1200M3_FeHeAr.fits ├── goodman_comp_1200M4_GG455_CuHeAr.fits ├── goodman_comp_1200M4_GG455_FeHeAr.fits ├── goodman_comp_1200M4_GG455_HgArNe.fits ├── goodman_comp_1200M4_GG455_Ne.fits ├── goodman_comp_1200M5_GG455_Ar.fits ├── goodman_comp_1200M5_GG455_CuHeAr.fits ├── goodman_comp_1200M5_GG455_FeHeAr.fits ├── goodman_comp_1200M5_GG455_HgAr.fits ├── goodman_comp_1200M5_GG455_HgArNe.fits ├── goodman_comp_1200M5_GG455_Ne.fits ├── goodman_comp_1200M6_GG495_Ar.fits ├── goodman_comp_1200M6_GG495_CuHeAr.fits ├── goodman_comp_1200M6_GG495_FeHeAr.fits ├── goodman_comp_1200M6_GG495_HgAr.fits ├── goodman_comp_1200M6_GG495_HgArNe.fits ├── goodman_comp_1200M6_GG495_Ne.fits ├── goodman_comp_1200M7_OG570_Ar.fits ├── goodman_comp_1200M7_OG570_CuHeAr.fits ├── goodman_comp_1200M7_OG570_FeHeAr.fits ├── goodman_comp_1200M7_OG570_HgAr.fits ├── goodman_comp_1200M7_OG570_HgArNe.fits ├── goodman_comp_1200M7_OG570_Ne.fits ├── goodman_comp_1200_CaNIR_OG570_HgArNe.fits ├── goodman_comp_2100_3900A_NO_FILTER_ArHg.fits ├── goodman_comp_2100_6507A_GG455_HgArNe.fits ├── goodman_comp_2100_650_GG455_HgNeAr.fits ├── goodman_comp_400M1_HgAr.fits ├── goodman_comp_400M1_HgArNe.fits ├── goodman_comp_400M2_GG455_Ar.fits ├── goodman_comp_400M2_GG455_CuHeAr.fits ├── goodman_comp_400M2_GG455_FeHeAr.fits ├── goodman_comp_400M2_GG455_HgAr.fits ├── goodman_comp_400M2_GG455_HgArNe.fits ├── goodman_comp_400M2_GG455_Ne.fits ├── goodman_comp_600Blue_CuHeAr.fits ├── goodman_comp_600Blue_HgAr.fits ├── goodman_comp_600Blue_HgArNe.fits ├── goodman_comp_600Mid_GG385_HgAr.fits ├── goodman_comp_600Mid_GG395_HgArNe.fits ├── goodman_comp_600Red_GG495_Ar.fits ├── goodman_comp_600Red_GG495_CuHeAr.fits ├── goodman_comp_600Red_GG495_FeHeAr.fits ├── goodman_comp_600Red_GG495_HgAr.fits ├── goodman_comp_600Red_GG495_HgArNe.fits ├── goodman_comp_600Red_GG495_Ne.fits ├── goodman_comp_600UV_CuHeAr.fits ├── goodman_comp_600UV_HgAr.fits ├── goodman_comp_600UV_HgArNe.fits ├── goodman_comp_930M1_HgAr.fits ├── goodman_comp_930M1_HgArNe.fits ├── goodman_comp_930M2_Ar.fits ├── goodman_comp_930M2_CuHeAr.fits ├── goodman_comp_930M2_FeHeAr.fits ├── goodman_comp_930M2_HgAr.fits ├── goodman_comp_930M2_HgArNe.fits ├── goodman_comp_930M3_GG385_CuHeAr.fits ├── goodman_comp_930M3_GG385_FeHeAr.fits ├── goodman_comp_930M4_GG495_CuHeAr.fits ├── goodman_comp_930M4_GG495_HgAr.fits ├── goodman_comp_930M4_GG495_HgArNe.fits ├── goodman_comp_930M4_GG495_Ne.fits ├── 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