├── .gitignore ├── .zenodo.json ├── CITATION.cff ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── LICENSE ├── README.md ├── codemeta.json ├── github-mentions-grep.txt ├── notebooks ├── EuPMCCodeReferences.ipynb ├── IsSoftwareUpdated.ipynb ├── RSE18CodeCitePresentation.ipynb ├── RSE18CodeCitePresentation.slides.html ├── Term occurrence and affiliations.ipynb ├── citations-over-time-springer.ipynb ├── getpapers.ipynb ├── getpapers.md ├── img │ ├── commitsperdaysincepublication.png │ ├── commitssincepublication.png │ ├── contributorfile.png │ ├── dois-for-software.png │ ├── licenceandreadme.png │ ├── softwarereferences.png │ ├── stillresolve.png │ ├── termoccurencefigshare.png │ ├── termoccurencegithub.png │ └── termoccurencezenodo.png ├── process_eupmc.py ├── process_urls.py ├── process_zenodo.py ├── resolvre_and_check_resources.ipynb └── springerFullTextApi.py ├── requirements.txt ├── sample_data ├── dict_of_papers.json └── small_dict_of_papers.json └── webAbout.txt /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/.gitignore -------------------------------------------------------------------------------- /.zenodo.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/.zenodo.json -------------------------------------------------------------------------------- /CITATION.cff: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/CITATION.cff -------------------------------------------------------------------------------- /CODE_OF_CONDUCT.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/CODE_OF_CONDUCT.md -------------------------------------------------------------------------------- /CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/CONTRIBUTING.md -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/README.md -------------------------------------------------------------------------------- /codemeta.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/codemeta.json -------------------------------------------------------------------------------- /github-mentions-grep.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/github-mentions-grep.txt -------------------------------------------------------------------------------- /notebooks/EuPMCCodeReferences.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/EuPMCCodeReferences.ipynb -------------------------------------------------------------------------------- /notebooks/IsSoftwareUpdated.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/IsSoftwareUpdated.ipynb -------------------------------------------------------------------------------- /notebooks/RSE18CodeCitePresentation.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/RSE18CodeCitePresentation.ipynb -------------------------------------------------------------------------------- /notebooks/RSE18CodeCitePresentation.slides.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/RSE18CodeCitePresentation.slides.html -------------------------------------------------------------------------------- /notebooks/Term occurrence and affiliations.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/Term occurrence and affiliations.ipynb -------------------------------------------------------------------------------- /notebooks/citations-over-time-springer.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/citations-over-time-springer.ipynb -------------------------------------------------------------------------------- /notebooks/getpapers.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/getpapers.ipynb -------------------------------------------------------------------------------- /notebooks/getpapers.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/getpapers.md -------------------------------------------------------------------------------- /notebooks/img/commitsperdaysincepublication.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/img/commitsperdaysincepublication.png -------------------------------------------------------------------------------- /notebooks/img/commitssincepublication.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/img/commitssincepublication.png -------------------------------------------------------------------------------- /notebooks/img/contributorfile.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/img/contributorfile.png -------------------------------------------------------------------------------- /notebooks/img/dois-for-software.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/img/dois-for-software.png -------------------------------------------------------------------------------- /notebooks/img/licenceandreadme.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/img/licenceandreadme.png -------------------------------------------------------------------------------- /notebooks/img/softwarereferences.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/img/softwarereferences.png -------------------------------------------------------------------------------- /notebooks/img/stillresolve.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/img/stillresolve.png -------------------------------------------------------------------------------- /notebooks/img/termoccurencefigshare.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/img/termoccurencefigshare.png -------------------------------------------------------------------------------- /notebooks/img/termoccurencegithub.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/img/termoccurencegithub.png -------------------------------------------------------------------------------- /notebooks/img/termoccurencezenodo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/img/termoccurencezenodo.png -------------------------------------------------------------------------------- /notebooks/process_eupmc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/process_eupmc.py -------------------------------------------------------------------------------- /notebooks/process_urls.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/process_urls.py -------------------------------------------------------------------------------- /notebooks/process_zenodo.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/process_zenodo.py -------------------------------------------------------------------------------- /notebooks/resolvre_and_check_resources.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/resolvre_and_check_resources.ipynb -------------------------------------------------------------------------------- /notebooks/springerFullTextApi.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/notebooks/springerFullTextApi.py -------------------------------------------------------------------------------- /requirements.txt: -------------------------------------------------------------------------------- 1 | requests 2 | datetime 3 | pandas 4 | pygithub 5 | urllib3 6 | -------------------------------------------------------------------------------- /sample_data/dict_of_papers.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/sample_data/dict_of_papers.json -------------------------------------------------------------------------------- /sample_data/small_dict_of_papers.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/sample_data/small_dict_of_papers.json -------------------------------------------------------------------------------- /webAbout.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/softwaresaved/code-cite/HEAD/webAbout.txt --------------------------------------------------------------------------------