├── .github ├── actions │ └── singularity │ │ └── action.yml └── workflows │ └── publish.yml ├── .nojekyll ├── CHANGELOG.md ├── FAQ.md ├── README.md ├── data ├── 3.8.5.lua ├── connect │ ├── connect.docker │ ├── docker-compose.yml │ └── rstudio-connect.gcfg ├── examples │ ├── R.centos7.sdef │ ├── R.focal.sdef │ ├── README.md │ ├── batchtools │ │ ├── README.md │ │ └── example │ │ │ ├── batchtools.conf.R │ │ │ ├── batchtools.slurm.tmpl │ │ │ ├── function.R │ │ │ ├── renv.lock │ │ │ └── run.sh │ ├── clustermq │ │ ├── README.md │ │ └── example │ │ │ ├── function.R │ │ │ ├── renv.lock │ │ │ ├── run.sh │ │ │ └── slurm.tmpl │ └── scripts │ │ └── create.R ├── r-session-complete │ ├── build.env │ ├── docker-compose.yml │ ├── focal │ │ ├── Dockerfile │ │ └── r-session-complete.sdef │ ├── jammy │ │ ├── Dockerfile │ │ └── r-session-complete.sdef │ ├── noble │ │ ├── Dockerfile │ │ └── r-session-complete.sdef │ ├── rhel8 │ │ ├── Dockerfile │ │ └── r-session-complete.sdef │ ├── rhel9 │ │ ├── Dockerfile │ │ └── r-session-complete.sdef │ ├── rockylinux8 │ │ ├── Dockerfile │ │ └── r-session-complete.sdef │ ├── rockylinux9 │ │ ├── Dockerfile │ │ └── r-session-complete.sdef │ └── scripts │ │ ├── bioc.txt │ │ ├── install-apptainer.sh │ │ ├── install-pro-driver.sh │ │ ├── install-python.sh │ │ ├── install-quarto.sh │ │ ├── install-session-components.sh │ │ ├── install-slurm.sh │ │ ├── install-texlive.sh │ │ ├── r-packages.txt │ │ ├── rhn.sh │ │ ├── run.R │ │ └── zz_workbench_singularity_env_vars.sh └── workbench │ ├── docker-compose.yml │ ├── etc │ ├── jupyter.conf │ ├── launcher.conf │ ├── launcher.slurm.conf │ ├── launcher.slurm.profiles.conf │ └── rserver.conf │ ├── scripts │ └── run.R │ └── workbench.docker ├── images ├── RSWB_Slurm_singularity1.drawio.png ├── logo.png └── rsw-k8s-hpc.drawio.png └── slurm-singularity-exec ├── CMakeLists.txt ├── LICENSE ├── README.md ├── main.cpp ├── singularity-exec.conf.in └── slurm-singularity-wrapper.sh 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