├── .Rbuildignore ├── DESCRIPTION ├── LICENSE ├── MEGENA_1.6.tar.gz ├── NAMESPACE ├── R ├── ClusteringPackage.R ├── Combined_functions.R ├── CorrelationScreen.R ├── Downstream_TableManip.R ├── ModuleHierarchyPlot.R ├── ModulePlot.R ├── NetworkSummary.R ├── Network_Visualizations.R ├── PFN_Computation.R ├── PFN_plot_colors.R ├── RcppExports.R ├── eigengene.R ├── enrichment_functions.R └── sunburst_drawing.R ├── README.md ├── data ├── FrequentSets.v6.2.RData ├── Sample_Expression.RData └── datalist ├── man ├── FrequenctSets.v6.2.Rd ├── MEGENA-package.Rd ├── MEGENA.ModuleSummary.Rd ├── Sample_Expression.Rd ├── calculate.PFN.Rd ├── calculate.rho.signed.Rd ├── compute.PFN.par.Rd ├── datExpr.Rd ├── do.MEGENA.Rd ├── draw_sunburst_wt_fill.Rd ├── get.DegreeHubStatistic.Rd ├── get.hub.summary.Rd ├── get.union.cut.Rd ├── get_module_hierarchy_graph.Rd ├── module_convert_to_table.Rd ├── output.geneSet.file.Rd ├── perform.AllPairs.FET.Rd ├── perform.ijPairs.FET.Rd ├── planaritytest.Rd ├── plot_module.Rd ├── plot_module_hierarchy.Rd ├── plot_subgraph.Rd └── read.geneSet.Rd ├── src ├── MEGENA.dll ├── RcppExports.cpp ├── RcppExports.o ├── planaritytest.cpp └── planaritytest.o └── vignettes ├── MEGENA_pipeline.html ├── MEGENA_pipeline_03102022.Rmd └── MEGENA_pipeline_files └── MathJax.js /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/songw01/MEGENA/HEAD/.Rbuildignore -------------------------------------------------------------------------------- /DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/songw01/MEGENA/HEAD/DESCRIPTION -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/songw01/MEGENA/HEAD/LICENSE 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