├── .gitignore ├── .gitmodules ├── Dockerfile ├── LICENSE ├── README.md ├── apps ├── README.md ├── ai │ ├── README.md │ ├── dockerfiles │ │ ├── Dockerfile.common │ │ └── Dockerfile.vllm │ ├── megatron_atlahs_trace.patch │ ├── mmada_atlahs_trace.patch │ ├── patches │ │ ├── megatron_atlahs_trace.patch │ │ └── mmada_atlahs_trace.patch │ ├── scripts │ │ ├── build_vllm.sh │ │ ├── run_dlrm.sh │ │ ├── run_megatron.sh │ │ ├── run_mmada.sh │ │ ├── run_moe.sh │ │ ├── run_vllm.sh │ │ └── vllm_inference.py │ └── vllm_atlahs_trace.patch └── hpc │ ├── Dockerfile │ ├── README.md │ ├── build_apps.py │ ├── build_container.sh │ ├── deps │ └── env.sh │ └── input │ ├── icon │ ├── data │ │ ├── bc_ozone_ape.nc │ │ └── icon_grid_0013_R02B04_G.nc │ ├── run-icon.sh │ └── src │ │ ├── mo_atmo_nonhydrostatic.f90 │ │ └── mo_mpi.f90 │ └── milc │ └── milc.in ├── atlahs_entry.py ├── docs └── overview.png ├── entrypoint.sh ├── goal_gen ├── README.md ├── ai │ ├── README.md │ ├── nccl_goal_generator │ │ ├── generator_modules │ │ │ ├── apply_config.py │ │ │ ├── data_dependency_modules │ │ │ │ ├── events_dependency.py │ │ │ │ ├── in_gpu_dependency.py │ │ │ │ ├── inter_node_dependency.py │ │ │ │ ├── intra_node_gpu_transfer_time.py │ │ │ │ ├── reduction_copy_time.py │ │ │ │ └── utils.py │ │ │ ├── manipulate_events.py │ │ │ ├── nsys_events.py │ │ │ └── nsys_events_r.py │ │ ├── get_traced_events.py │ │ ├── node_gpu_config.yaml │ │ ├── npkit_benchmark_results │ │ │ ├── ault │ │ │ │ ├── npkit_data_summary_LL.json │ │ │ │ └── npkit_data_summary_Simple.json │ │ │ ├── clariden │ │ │ │ ├── npkit_data_summary_LL.json │ │ │ │ └── npkit_data_summary_Simple.json │ │ │ └── play │ │ │ │ ├── npkit_data_summary_LL.json │ │ │ │ └── npkit_data_summary_Simple.json │ │ └── readme.md │ ├── node_gpu_config.yaml │ └── run_ds.sh ├── hpc │ ├── README.md │ ├── Schedgen │ │ ├── Makefile │ │ ├── MersenneTwister.h │ │ ├── buffer_element.cpp │ │ ├── buffer_element.hpp │ │ ├── cmdline.c │ │ ├── cmdline.h │ │ ├── gen_traces.sh │ │ ├── goal_comm.h │ │ ├── liballprof-samples │ │ │ ├── bcast │ │ │ │ ├── trace_bcast-0.dat │ │ │ │ ├── trace_bcast-1.dat │ │ │ │ ├── trace_bcast-2.dat │ │ │ │ └── trace_bcast-3.dat │ │ │ └── sweep3d-2x2 │ │ │ │ ├── pmpi-trace-rank-0.txt │ │ │ │ ├── pmpi-trace-rank-1.txt │ │ │ │ ├── pmpi-trace-rank-2.txt │ │ │ │ └── pmpi-trace-rank-3.txt │ │ ├── process_trace.cpp │ │ ├── schedgen │ │ ├── schedgen.cpp │ │ ├── schedgen.ggo │ │ ├── schedgen.hpp │ │ └── trace_reader.hpp │ ├── liballprof │ │ ├── AUTHORS │ │ ├── COPYING │ │ ├── ChangeLog │ │ ├── INSTALL │ │ ├── Makefile.am │ │ ├── NEWS │ │ ├── README │ │ ├── allprof.h │ │ ├── configure │ │ ├── configure.ac │ │ ├── gencode.py │ │ ├── makefile.measure-time │ │ ├── measure_time.c │ │ ├── measure_time_f77.c │ │ ├── mpi.h_mpich │ │ ├── mpi_helloworld.c │ │ ├── mpi_helloworld.f90 │ │ ├── mpipclog.c │ │ ├── mpipf77log.c │ │ ├── numbers.h │ │ ├── setup-clariden.sh │ │ ├── setup-daint.sh │ │ ├── setup-euler.sh │ │ ├── setup.sh │ │ ├── sync.c │ │ ├── sync.h │ │ ├── template.c │ │ └── wrapper.sh │ └── liballprof2 │ │ ├── Makefile │ │ ├── README.md │ │ ├── fc_mangle.h │ │ ├── gencode.py │ │ ├── gensem.py │ │ ├── mpi.h │ │ ├── mpi_c_wrapper.c │ │ ├── mpi_f_wrapper.c │ │ ├── mpi_sem.yml │ │ └── tracer_main.c ├── merge_goals copy.py ├── merge_goals.py ├── merge_goals_config.json ├── merge_random.json └── storage │ ├── DirectDrive_Documentation.pdf │ ├── README.md │ └── block-io-tracer │ ├── README.md │ └── src │ └── block-io-tracer.py ├── plotting ├── flow_completion_times_comparison.pdf ├── flow_completion_times_comparison.png ├── job_alloc.py ├── job_allocation_runtime.pdf ├── job_allocation_runtime.png ├── lgs_vs_htsim.pdf ├── motivational.py ├── motivational_fixed_values.py ├── motivational_norm.py ├── plot_lgsvshtsim.py └── study.py ├── scripts ├── build.py ├── configs │ ├── astrasim_network.yml │ ├── astrasim_sys.json │ ├── lgs_ai_config.yaml │ └── lgs_hpc_config.yaml ├── et_to_chakra.py ├── et_to_chakra.sh ├── get_measured_runtime_ai.py ├── get_non_overlapped_compute.py ├── nccl_goal_gen.sh ├── nsys_reports_to_sqlite.sh ├── plot.py ├── run.py ├── run_ai_app.py ├── run_ai_app.sh ├── run_case_studies.py ├── run_network_analytical.sh ├── run_simulator.py ├── run_validation_exp.py └── slurm_chakra_gen.sh └── sim ├── LogGOPSim ├── Goal.hpp ├── LogGOPSim.cpp ├── LogGOPSim.hpp ├── LogGOPSim.o ├── Makefile ├── MersenneTwister.h ├── Network.hpp ├── Noise.hpp ├── Parser.hpp ├── README ├── README-mpi-matching ├── TimelineVisualization.hpp ├── cmdline.o ├── simulator.ggo ├── txt2bin.ggo └── txt2bin.re ├── README.md └── htsim-backend ├── .gitignore ├── LICENSE ├── README.md └── sim ├── .gitignore ├── EXAMPLES ├── collateral │ ├── README.md │ ├── collateral_dctcp.pdf │ ├── collateral_dctcp.plot │ ├── collateral_dctcp_lossless.pdf │ ├── collateral_dctcp_lossless.plot │ ├── collateral_ndp.pdf │ ├── collateral_ndp.plot │ ├── incast.cm │ ├── incast2.cm │ ├── process_dctcp_collateral.py │ ├── process_dctcp_collateral_lossless.py │ ├── process_ndp_collateral.py │ ├── run.sh │ ├── run_dctcp_collateral.sh │ ├── run_dctcp_collateral_lossless.sh │ └── run_ndp_collateral.sh ├── failure │ ├── README.md │ ├── dctcp.rates │ ├── failure.pdf │ ├── failure.plot │ ├── mptcp.rates │ ├── ndp_penalty.rates │ ├── ndp_perm.rates │ ├── process_data.py │ ├── process_dctcp_data.py │ ├── process_mptcp_data.py │ └── run.sh ├── in_and_out │ ├── README.md │ ├── logfile.rates │ ├── process_data.py │ ├── run.sh │ └── topology.png ├── incast_scaling │ ├── README.md │ ├── incast_overhead.pdf │ ├── incast_overhead.plot │ ├── incast_sensitivity.pdf │ ├── incast_sensitivity.plot │ ├── process_data_incast_conns.py │ └── run.sh ├── incast_shortflows │ ├── README.md │ ├── incast.pdf │ ├── incast.plot │ ├── process_data_incast_conns.py │ └── run.sh └── permutation │ ├── .gitignore │ ├── README.md │ ├── foo │ ├── permutation.cm │ ├── permutation.pdf │ ├── permutation.plot │ ├── process_data.py │ ├── process_dctcp_data.py │ ├── process_mptcp_data.py │ └── run.sh ├── Makefile ├── README.md ├── aeolusqueue.cpp ├── aeolusqueue.h ├── callback_pipe.cpp ├── callback_pipe.h ├── cbr.cpp ├── cbr.h ├── cbrpacket.cpp ├── cbrpacket.h ├── circular_buffer.h ├── clock.cpp ├── clock.h ├── compositeprioqueue.cpp ├── compositeprioqueue.h ├── compositequeue.cpp ├── compositequeue.h ├── compute_event.cpp ├── compute_event.h ├── config.cpp ├── config.h ├── cpqueue.cpp ├── cpqueue.h ├── datacenter ├── Makefile ├── atlahs_api.h ├── atlahs_event.h ├── atlahs_htsim_api.cpp ├── atlahs_htsim_api.h ├── bcube_topology.cpp ├── bcube_topology.h ├── camcubetopology.cpp ├── camcubetopology.h ├── connection_matrices │ ├── bidir.cm │ ├── gen_allreduce.py │ ├── gen_allreduce_butterfly.py │ ├── gen_incast.py │ ├── gen_outcast_incast.py │ ├── gen_permutation.py │ ├── gen_serial_alltoall.py │ ├── gen_serialn_alltoall.py │ ├── gen_serialn_alltoall_prio.py │ ├── gen_testing.py │ ├── incast.cm │ ├── incast_128.cm │ ├── incast_20.cm │ ├── one.cm │ ├── outcast_incast.cm │ ├── parking.cm │ ├── perm_1024n_1024c_0u_2000000b.cm │ ├── perm_16n_16c_2MB.cm │ ├── perm_32.cm │ ├── test.cm │ └── test2.cm ├── connection_matrix.cpp ├── connection_matrix.h ├── dragon_fly_topology.cpp ├── dragon_fly_topology.h ├── fat_tree_switch.cpp ├── fat_tree_switch.h ├── fat_tree_topology.cpp ├── fat_tree_topology.h ├── firstfit.cpp ├── firstfit.h ├── flow_completion_times_storage.pdf ├── generic_topology.cpp ├── generic_topology.h ├── htsim_eqds ├── htsim_ndp ├── htsim_uec ├── incast.cpp ├── incast.h ├── logsim-interface.cpp ├── logsim-interface.h ├── main.h ├── main_eqds.cpp ├── main_hpcc.cpp ├── main_ndp.cpp ├── main_roce.cpp ├── main_swift.cpp ├── main_tcp.cpp ├── main_uec.cpp ├── micro.py ├── mtcp_subflow_control.cpp ├── mtcp_subflow_control.h ├── multihomed_fat_tree_topology.cpp ├── multihomed_fat_tree_topology.h ├── old_tests │ ├── Makefile │ ├── README │ ├── main_dctcp_incast_collateral.cpp │ ├── main_dctcp_incast_collateral_lossless.cpp │ ├── main_dctcp_permutation.cpp │ ├── main_hpcc.cpp │ ├── main_ndp2.cpp │ ├── main_ndp_alltoall.cpp │ ├── main_ndp_camcube_permutation.cpp │ ├── main_ndp_dragonfly_permutation.cpp │ ├── main_ndp_in_out.cpp │ ├── main_ndp_incast.cpp │ ├── main_ndp_incast2.cpp │ ├── main_ndp_incast2b.cpp │ ├── main_ndp_incast_collateral.cpp │ ├── main_ndp_incast_shortflows.cpp │ ├── main_ndp_incast_tor.cpp │ ├── main_ndp_outcast.cpp │ ├── main_ndp_outcast_incast.cpp │ ├── main_ndp_outcast_shortflows.cpp │ ├── main_ndp_oversubscribed.cpp │ ├── main_ndp_permutation.cpp │ ├── main_ndp_permutation_fail.cpp │ ├── main_ndp_permutation_incast.cpp │ ├── main_ndp_permutation_lossless.cpp │ ├── main_ndp_permutation_tor.cpp │ ├── main_ndp_random.cpp │ ├── main_ndp_random_shortflows_tor.cpp │ ├── main_ndprts_alltoall.cpp │ ├── main_ndprts_outcast.cpp │ ├── main_ndprts_outcast_incast.cpp │ ├── main_ndprts_permutation_incast.cpp │ ├── main_ndptunnel_incast_shortflows.cpp │ ├── main_ndptunnel_permutation.cpp │ ├── main_swift_incast.cpp │ ├── main_swift_incast2.cpp │ ├── main_swift_incast2b.cpp │ ├── main_swift_incast3.cpp │ ├── main_tcp_dragonfly_permutation.cpp │ ├── main_tcp_outcast_incast.cpp │ ├── main_tcp_perm_shortflows.cpp │ └── main_tcp_permutation.cpp ├── oversubscribed_fat_tree_topology.cpp ├── oversubscribed_fat_tree_topology.h ├── parking.py ├── plot_cwnd.py ├── plot_rtt.py ├── plot_storage_fct.py ├── shortflows.cpp ├── shortflows.h ├── star_topology.cpp ├── star_topology.h ├── subflow_control.cpp ├── subflow_control.h ├── throughput.py ├── topologies │ ├── fat_tree_1024.topo │ ├── leaf_spine_1024.topo │ ├── leaf_spine_1024_hpc.topo │ ├── leaf_spine_128_1os.topo │ ├── leaf_spine_128_4os.topo │ ├── leaf_spine_128_8os.topo │ ├── leaf_spine_16_1os.topo │ ├── leaf_spine_16_2os.topo │ ├── leaf_spine_16_4os.topo │ ├── leaf_spine_32_1os.topo │ ├── leaf_spine_32_4os.topo │ ├── leaf_spine_64_1os.topo │ ├── leaf_spine_64_4os.topo │ ├── leaf_spine_tiny.topo │ ├── parking.topo │ └── test.topo ├── topology.h ├── validate.py ├── validate.txt ├── vl2_topology.cpp └── vl2_topology.h ├── dctcp.cpp ├── dctcp.h ├── dctcp_transfer.cpp ├── dctcp_transfer.h ├── drawable.h ├── ecn.h ├── ecnprioqueue.cpp ├── ecnprioqueue.h ├── ecnqueue.cpp ├── ecnqueue.h ├── eqds.cpp ├── eqds.h ├── eqds_logger.cpp ├── eqds_logger.h ├── eqdspacket.cpp ├── eqdspacket.h ├── eth_pause_packet.cpp ├── eth_pause_packet.h ├── eventlist.cpp ├── eventlist.h ├── exoqueue.cpp ├── exoqueue.h ├── faircompositequeue.cpp ├── faircompositequeue.h ├── fairpullqueue.cpp ├── fairpullqueue.h ├── hpcc.cpp ├── hpcc.h ├── hpccpacket.cpp ├── hpccpacket.h ├── lgs ├── Goal.hpp ├── LogGOPSim.hpp ├── MersenneTwister.h ├── Noise.hpp ├── Parser.hpp ├── README ├── README-mpi-matching ├── TimelineVisualization.hpp ├── cmdline.c ├── cmdline.h ├── cmdline_txt2bin.c ├── cmdline_txt2bin.h ├── logsim.cpp ├── logsim.h └── txt2bin.cpp ├── logfile.cpp ├── logfile.h ├── loggers.cpp ├── loggers.h ├── loggertypes.h ├── matrix.h ├── meter.cpp ├── meter.h ├── mpswift.cpp ├── mpswift.h ├── mtcp.cpp ├── mtcp.h ├── ndp-orig.cpp ├── ndp.cpp ├── ndp.h ├── ndp_transfer.cpp ├── ndp_transfer.h ├── ndppacket.cpp ├── ndppacket.h ├── ndptunnel.cpp ├── ndptunnel.h ├── ndptunnelpacket.cpp ├── ndptunnelpacket.h ├── network.cpp ├── network.h ├── null_event.cpp ├── null_event.h ├── parse_output.cpp ├── pipe.cpp ├── pipe.h ├── priopullqueue.cpp ├── priopullqueue.h ├── prioqueue.cpp ├── prioqueue.h ├── qcn.cpp ├── qcn.h ├── queue.cpp ├── queue.h ├── queue_lossless.cpp ├── queue_lossless.h ├── queue_lossless_input.cpp ├── queue_lossless_input.h ├── queue_lossless_output.cpp ├── queue_lossless_output.h ├── randomqueue.cpp ├── randomqueue.h ├── rcppacket.cpp ├── rng.cpp ├── roce.cpp ├── roce.h ├── rocepacket.cpp ├── rocepacket.h ├── route.cpp ├── route.h ├── routetable.cpp ├── routetable.h ├── rtx_timer.cpp ├── rtx_timer.h ├── sent_packets.cpp ├── sent_packets.h ├── strack.cpp ├── strack.h ├── strackpacket.cpp ├── strackpacket.h ├── swift.cpp ├── swift.h ├── swift_new.cpp ├── swift_new.h ├── swift_scheduler.cpp ├── swift_scheduler.h ├── swift_transfer.cpp ├── swift_transfer.h ├── swiftpacket.cpp ├── swiftpacket.h ├── switch.cpp ├── switch.h ├── tcp.cpp ├── tcp.h ├── tcp_periodic.cpp ├── tcp_periodic.h ├── tcp_transfer.cpp ├── tcp_transfer.h ├── tcppacket.cpp ├── tcppacket.h ├── tests ├── Makefile ├── htsim-tests │ ├── bidir_ndp │ │ ├── default.ref │ │ └── test_config.json │ ├── bidir_swift │ │ ├── default.ref │ │ └── test_config.json │ ├── dumbell_hpcc │ │ ├── default.ref │ │ └── test_config.json │ ├── dumbell_ndp │ │ ├── default.ref │ │ └── test_config.json │ ├── dumbell_ndptunnel │ │ ├── default.ref │ │ └── test_config.json │ ├── dumbell_roce │ │ ├── default.ref │ │ └── test_config.json │ ├── dumbell_strack │ │ ├── default.ref │ │ └── test_config.json │ ├── dumbell_swift │ │ ├── default.ref │ │ └── test_config.json │ ├── dumbell_tcp │ │ ├── default.ref │ │ └── test_config.json │ ├── multihop_swift │ │ ├── default.ref │ │ └── test_config.json │ ├── multihop_swift2 │ │ ├── default.ref │ │ └── test_config.json │ ├── multipath_swift │ │ ├── default.ref │ │ └── test_config.json │ └── trigger_test │ │ ├── default.ref │ │ └── test_config.json ├── htsim_bidir_ndp ├── htsim_bidir_swift ├── htsim_dumbell_hpcc ├── htsim_dumbell_ndp ├── htsim_dumbell_ndptunnel ├── htsim_dumbell_roce ├── htsim_dumbell_strack ├── htsim_dumbell_swift ├── htsim_dumbell_tcp ├── htsim_multihop_swift ├── htsim_multihop_swift2 ├── htsim_multipath_swift ├── htsim_trigger_test ├── main.cpp ├── main_bidir_ndp.cpp ├── main_bidir_swift.cpp ├── main_dumbell_hpcc.cpp ├── main_dumbell_ndp.cpp ├── main_dumbell_ndptunnel.cpp ├── main_dumbell_roce.cpp ├── main_dumbell_strack.cpp ├── main_dumbell_swift.cpp ├── main_dumbell_tcp.cpp ├── main_multihop_swift.cpp ├── main_multihop_swift2.cpp ├── main_multipath_swift.cpp ├── main_trigger_test.cpp └── tests.py ├── trigger.cpp ├── trigger.h ├── 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