├── .gitignore ├── README.md ├── common ├── math │ ├── distance.py │ ├── external_func.py │ ├── generator │ │ ├── gen_c.py │ │ ├── gen_extract.py │ │ ├── gen_py.py │ │ ├── solve_c.py │ │ └── solve_py.py │ ├── gipc.py │ ├── graph_tools.py │ ├── ipc.py │ ├── math_tools.py │ └── wrapper │ │ ├── EIGEN.h │ │ ├── EVCTCD │ │ ├── CTCD.cpp │ │ ├── CTCD.h │ │ └── rpoly.h │ │ ├── Eigen │ │ ├── CMakeLists.txt │ │ ├── Cholesky │ │ ├── CholmodSupport │ │ ├── Core │ │ ├── Dense │ │ ├── Eigen │ │ ├── Eigenvalues │ │ ├── Geometry │ │ ├── Householder │ │ ├── IterativeLinearSolvers │ │ ├── Jacobi │ │ ├── LU │ │ ├── MetisSupport │ │ ├── OrderingMethods │ │ ├── PaStiXSupport │ │ ├── PardisoSupport │ │ ├── QR │ │ ├── QtAlignedMalloc │ │ ├── SPQRSupport │ │ ├── SVD │ │ ├── Sparse │ │ ├── SparseCholesky │ │ ├── SparseCore │ │ ├── SparseLU │ │ ├── SparseQR │ │ ├── StdDeque │ │ ├── StdList │ │ ├── StdVector │ │ ├── SuperLUSupport │ │ ├── UmfPackSupport │ │ └── src │ │ │ ├── Cholesky │ │ │ ├── LDLT.h │ │ │ ├── LLT.h │ │ │ └── LLT_LAPACKE.h │ │ │ ├── CholmodSupport │ │ │ └── CholmodSupport.h │ │ │ ├── Core │ │ │ ├── Array.h │ │ │ ├── ArrayBase.h │ │ │ ├── ArrayWrapper.h │ │ │ ├── Assign.h │ │ │ ├── AssignEvaluator.h │ │ │ ├── Assign_MKL.h │ │ │ ├── BandMatrix.h │ │ │ ├── Block.h │ │ │ ├── BooleanRedux.h │ │ │ ├── CommaInitializer.h │ │ │ ├── ConditionEstimator.h │ │ │ ├── CoreEvaluators.h │ │ │ ├── CoreIterators.h │ │ │ ├── CwiseBinaryOp.h │ │ │ ├── CwiseNullaryOp.h │ │ │ ├── CwiseTernaryOp.h │ │ │ ├── CwiseUnaryOp.h │ │ │ ├── CwiseUnaryView.h │ │ │ ├── DenseBase.h │ │ │ ├── DenseCoeffsBase.h │ │ │ ├── DenseStorage.h │ │ │ ├── Diagonal.h │ │ │ ├── DiagonalMatrix.h │ │ │ ├── DiagonalProduct.h │ │ │ ├── Dot.h │ │ │ ├── EigenBase.h │ │ │ ├── ForceAlignedAccess.h │ │ │ ├── Fuzzy.h │ │ │ ├── GeneralProduct.h │ │ │ ├── GenericPacketMath.h │ │ │ ├── GlobalFunctions.h │ │ │ ├── IO.h │ │ │ ├── Inverse.h │ │ │ ├── Map.h │ │ │ ├── MapBase.h │ │ │ ├── MathFunctions.h │ │ │ ├── MathFunctionsImpl.h │ │ │ ├── Matrix.h │ │ │ ├── MatrixBase.h │ │ │ ├── NestByValue.h │ │ │ ├── NoAlias.h │ │ │ ├── NumTraits.h │ │ │ ├── PermutationMatrix.h │ │ │ ├── PlainObjectBase.h │ │ │ ├── Product.h │ │ │ ├── ProductEvaluators.h │ │ │ ├── Random.h │ │ │ ├── Redux.h │ │ │ ├── Ref.h │ │ │ ├── Replicate.h │ │ │ ├── ReturnByValue.h │ │ │ ├── Reverse.h │ │ │ ├── Select.h │ │ │ ├── SelfAdjointView.h │ │ │ ├── SelfCwiseBinaryOp.h │ │ │ ├── Solve.h │ │ │ ├── SolveTriangular.h │ │ │ ├── SolverBase.h │ │ │ ├── StableNorm.h │ │ │ ├── Stride.h │ │ │ ├── Swap.h │ │ │ ├── Transpose.h │ │ │ ├── Transpositions.h │ │ │ ├── TriangularMatrix.h │ │ │ ├── VectorBlock.h │ │ │ ├── VectorwiseOp.h │ │ │ ├── Visitor.h │ │ │ ├── arch │ │ │ │ ├── AVX │ │ │ │ │ ├── Complex.h │ │ │ │ │ ├── MathFunctions.h │ │ │ │ │ ├── PacketMath.h │ │ │ │ │ └── TypeCasting.h │ │ │ │ ├── AVX512 │ │ │ │ │ ├── MathFunctions.h │ │ │ │ │ └── PacketMath.h │ │ │ │ ├── AltiVec │ │ │ │ │ ├── Complex.h │ │ │ │ │ ├── MathFunctions.h │ │ │ │ │ └── PacketMath.h │ │ │ │ ├── CUDA │ │ │ │ │ ├── Complex.h │ │ │ │ │ ├── Half.h │ │ │ │ │ ├── MathFunctions.h │ │ │ │ │ ├── PacketMath.h │ │ │ │ │ ├── PacketMathHalf.h │ │ │ │ │ └── TypeCasting.h │ │ │ │ ├── Default │ │ │ │ │ ├── ConjHelper.h │ │ │ │ │ └── Settings.h │ │ │ │ ├── NEON │ │ │ │ │ ├── Complex.h │ │ │ │ │ ├── MathFunctions.h │ │ │ │ │ └── PacketMath.h │ │ │ │ ├── SSE │ │ │ │ │ ├── Complex.h │ │ │ │ │ ├── MathFunctions.h │ │ │ │ │ ├── PacketMath.h │ │ │ │ │ └── TypeCasting.h │ │ │ │ └── ZVector │ │ │ │ │ ├── Complex.h │ │ │ │ │ ├── MathFunctions.h │ │ │ │ │ └── PacketMath.h │ │ │ ├── functors │ │ │ │ ├── AssignmentFunctors.h │ │ │ │ ├── BinaryFunctors.h │ │ │ │ ├── NullaryFunctors.h │ │ │ │ ├── StlFunctors.h │ │ │ │ ├── TernaryFunctors.h │ │ │ │ └── UnaryFunctors.h │ │ │ ├── products │ │ │ │ ├── GeneralBlockPanelKernel.h │ │ │ │ ├── GeneralMatrixMatrix.h │ │ │ │ ├── GeneralMatrixMatrixTriangular.h │ │ │ │ ├── GeneralMatrixMatrixTriangular_BLAS.h │ │ │ │ ├── GeneralMatrixMatrix_BLAS.h │ │ │ │ ├── GeneralMatrixVector.h │ │ │ │ ├── GeneralMatrixVector_BLAS.h │ │ │ │ ├── Parallelizer.h │ │ │ │ ├── SelfadjointMatrixMatrix.h │ │ │ │ ├── SelfadjointMatrixMatrix_BLAS.h │ │ │ │ ├── SelfadjointMatrixVector.h │ │ │ │ ├── SelfadjointMatrixVector_BLAS.h │ │ │ │ ├── SelfadjointProduct.h │ │ │ │ ├── SelfadjointRank2Update.h │ │ │ │ ├── TriangularMatrixMatrix.h │ │ │ │ ├── TriangularMatrixMatrix_BLAS.h │ │ │ │ ├── TriangularMatrixVector.h │ │ │ │ ├── TriangularMatrixVector_BLAS.h │ │ │ │ ├── TriangularSolverMatrix.h │ │ │ │ ├── TriangularSolverMatrix_BLAS.h │ │ │ │ └── TriangularSolverVector.h │ │ │ └── util │ │ │ │ ├── BlasUtil.h │ │ │ │ ├── Constants.h │ │ │ │ ├── DisableStupidWarnings.h │ │ │ │ ├── ForwardDeclarations.h │ │ │ │ ├── MKL_support.h │ │ │ │ ├── Macros.h │ │ │ │ ├── Memory.h │ │ │ │ ├── Meta.h │ │ │ │ ├── NonMPL2.h │ │ │ │ ├── ReenableStupidWarnings.h │ │ │ │ ├── StaticAssert.h │ │ │ │ └── XprHelper.h │ │ │ ├── Eigenvalues │ │ │ ├── ComplexEigenSolver.h │ │ │ ├── ComplexSchur.h │ │ │ ├── ComplexSchur_LAPACKE.h │ │ │ ├── EigenSolver.h │ │ │ ├── GeneralizedEigenSolver.h │ │ │ ├── GeneralizedSelfAdjointEigenSolver.h │ │ │ ├── HessenbergDecomposition.h │ │ │ ├── MatrixBaseEigenvalues.h │ │ │ ├── RealQZ.h │ │ │ ├── RealSchur.h │ │ │ ├── RealSchur_LAPACKE.h │ │ │ ├── SelfAdjointEigenSolver.h │ │ │ ├── SelfAdjointEigenSolver_LAPACKE.h │ │ │ └── Tridiagonalization.h │ │ │ ├── Geometry │ │ │ ├── AlignedBox.h │ │ │ ├── AngleAxis.h │ │ │ ├── EulerAngles.h │ │ │ ├── Homogeneous.h │ │ │ ├── Hyperplane.h │ │ │ ├── OrthoMethods.h │ │ │ ├── ParametrizedLine.h │ │ │ ├── Quaternion.h │ │ │ ├── Rotation2D.h │ │ │ ├── RotationBase.h │ │ │ ├── Scaling.h │ │ │ ├── Transform.h │ │ │ ├── Translation.h │ │ │ ├── Umeyama.h │ │ │ └── arch │ │ │ │ └── Geometry_SSE.h │ │ │ ├── Householder │ │ │ ├── BlockHouseholder.h │ │ │ ├── Householder.h │ │ │ └── HouseholderSequence.h │ │ │ ├── IterativeLinearSolvers │ │ │ ├── BasicPreconditioners.h │ │ │ ├── BiCGSTAB.h │ │ │ ├── ConjugateGradient.h │ │ │ ├── IncompleteCholesky.h │ │ │ ├── IncompleteLUT.h │ │ │ ├── IterativeSolverBase.h │ │ │ ├── LeastSquareConjugateGradient.h │ │ │ └── SolveWithGuess.h │ │ │ ├── Jacobi │ │ │ └── Jacobi.h │ │ │ ├── LU │ │ │ ├── Determinant.h │ │ │ ├── FullPivLU.h │ │ │ ├── InverseImpl.h │ │ │ ├── PartialPivLU.h │ │ │ ├── PartialPivLU_LAPACKE.h │ │ │ └── arch │ │ │ │ └── Inverse_SSE.h │ │ │ ├── MetisSupport │ │ │ └── MetisSupport.h │ │ │ ├── OrderingMethods │ │ │ ├── Amd.h │ │ │ ├── Eigen_Colamd.h │ │ │ └── Ordering.h │ │ │ ├── PaStiXSupport │ │ │ └── PaStiXSupport.h │ │ │ ├── PardisoSupport │ │ │ └── PardisoSupport.h │ │ │ ├── QR │ │ │ ├── ColPivHouseholderQR.h │ │ │ ├── ColPivHouseholderQR_LAPACKE.h │ │ │ ├── CompleteOrthogonalDecomposition.h │ │ │ ├── FullPivHouseholderQR.h │ │ │ ├── HouseholderQR.h │ │ │ └── HouseholderQR_LAPACKE.h │ │ │ ├── SPQRSupport │ │ │ └── SuiteSparseQRSupport.h │ │ │ ├── SVD │ │ │ ├── BDCSVD.h │ │ │ ├── JacobiSVD.h │ │ │ ├── JacobiSVD_LAPACKE.h │ │ │ ├── SVDBase.h │ │ │ └── UpperBidiagonalization.h │ │ │ ├── SparseCholesky │ │ │ ├── SimplicialCholesky.h │ │ │ └── SimplicialCholesky_impl.h │ │ │ ├── SparseCore │ │ │ ├── AmbiVector.h │ │ │ ├── CompressedStorage.h │ │ │ ├── ConservativeSparseSparseProduct.h │ │ │ ├── MappedSparseMatrix.h │ │ │ ├── SparseAssign.h │ │ │ ├── SparseBlock.h │ │ │ ├── SparseColEtree.h │ │ │ ├── SparseCompressedBase.h │ │ │ ├── SparseCwiseBinaryOp.h │ │ │ ├── SparseCwiseUnaryOp.h │ │ │ ├── SparseDenseProduct.h │ │ │ ├── SparseDiagonalProduct.h │ │ │ ├── SparseDot.h │ │ │ ├── SparseFuzzy.h │ │ │ ├── SparseMap.h │ │ │ ├── SparseMatrix.h │ │ │ ├── SparseMatrixBase.h │ │ │ ├── SparsePermutation.h │ │ │ ├── SparseProduct.h │ │ │ ├── SparseRedux.h │ │ │ ├── SparseRef.h │ │ │ ├── SparseSelfAdjointView.h │ │ │ ├── SparseSolverBase.h │ │ │ ├── SparseSparseProductWithPruning.h │ │ │ ├── SparseTranspose.h │ │ │ ├── SparseTriangularView.h │ │ │ ├── SparseUtil.h │ │ │ ├── SparseVector.h │ │ │ ├── SparseView.h │ │ │ └── TriangularSolver.h │ │ │ ├── SparseLU │ │ │ ├── SparseLU.h │ │ │ ├── SparseLUImpl.h │ │ │ ├── SparseLU_Memory.h │ │ │ ├── SparseLU_Structs.h │ │ │ ├── SparseLU_SupernodalMatrix.h │ │ │ ├── SparseLU_Utils.h │ │ │ ├── SparseLU_column_bmod.h │ │ │ ├── SparseLU_column_dfs.h │ │ │ ├── SparseLU_copy_to_ucol.h │ │ │ ├── SparseLU_gemm_kernel.h │ │ │ ├── SparseLU_heap_relax_snode.h │ │ │ ├── SparseLU_kernel_bmod.h │ │ │ ├── SparseLU_panel_bmod.h │ │ │ ├── SparseLU_panel_dfs.h │ │ │ ├── SparseLU_pivotL.h │ │ │ ├── SparseLU_pruneL.h │ │ │ └── SparseLU_relax_snode.h │ │ │ ├── SparseQR │ │ │ └── SparseQR.h │ │ │ ├── StlSupport │ │ │ ├── StdDeque.h │ │ │ ├── StdList.h │ │ │ ├── StdVector.h │ │ │ └── details.h │ │ │ ├── SuperLUSupport │ │ │ └── SuperLUSupport.h │ │ │ ├── UmfPackSupport │ │ │ └── UmfPackSupport.h │ │ │ ├── misc │ │ │ ├── Image.h │ │ │ ├── Kernel.h │ │ │ ├── RealSvd2x2.h │ │ │ ├── blas.h │ │ │ ├── lapack.h │ │ │ ├── lapacke.h │ │ │ └── lapacke_mangling.h │ │ │ └── plugins │ │ │ ├── ArrayCwiseBinaryOps.h │ │ │ ├── ArrayCwiseUnaryOps.h │ │ │ ├── BlockMethods.h │ │ │ ├── CommonCwiseBinaryOps.h │ │ │ ├── CommonCwiseUnaryOps.h │ │ │ ├── MatrixCwiseBinaryOps.h │ │ │ └── MatrixCwiseUnaryOps.h │ │ ├── GIVEN_ROTATION.h │ │ ├── MATH_TOOLS.h │ │ ├── POLAR_DECOMPOSITION.h │ │ ├── SINGULAR_VALUE_DECOMPOSITION.h │ │ ├── UTILS.h │ │ ├── VECTOR.h │ │ └── wrapper.cpp ├── physics │ ├── fixed_corotated.py │ └── neo_hookean.py └── utils │ ├── cfl.py │ ├── logger.py │ ├── particleSampling.py │ ├── plotter.py │ └── timer.py ├── projects ├── FastIPC │ ├── ADMM_GIPC.py │ ├── ADMM_IPC.py │ ├── NEWTON_IPC.py │ ├── README.MD │ ├── input │ │ ├── Sharkey.obj │ │ ├── Sharkey_floor.obj │ │ ├── Sharkey_valley.obj │ │ ├── arch │ │ │ ├── largeArch.01.msh │ │ │ ├── largeArch.02.msh │ │ │ ├── largeArch.03.msh │ │ │ ├── largeArch.04.msh │ │ │ ├── largeArch.05.msh │ │ │ ├── largeArch.06.msh │ │ │ ├── largeArch.07.msh │ │ │ ├── largeArch.08.msh │ │ │ ├── largeArch.09.msh │ │ │ ├── largeArch.10.msh │ │ │ ├── largeArch.11.msh │ │ │ ├── largeArch.12.msh │ │ │ ├── largeArch.13.msh │ │ │ ├── largeArch.14.msh │ │ │ ├── largeArch.15.msh │ │ │ ├── largeArch.16.msh │ │ │ ├── largeArch.17.msh │ │ │ ├── largeArch.18.msh │ │ │ ├── largeArch.19.msh │ │ │ ├── largeArch.20.msh │ │ │ ├── largeArch.21.msh │ │ │ ├── largeArch.22.msh │ │ │ ├── largeArch.23.msh │ │ │ ├── largeArch.24.msh │ │ │ └── largeArch.25.msh │ │ ├── cube.vtk │ │ ├── cubes.obj │ │ ├── fluffy.obj │ │ ├── fluffy_gen.py │ │ ├── items.obj │ │ ├── items_gen.py │ │ ├── mat150x150t40.msh │ │ ├── mat20x20.vtk │ │ ├── mat40x40.msh │ │ ├── noodles.obj │ │ ├── noodles_gen.py │ │ ├── sphere.obj │ │ ├── sphere1K.msh │ │ ├── sphere1K.vtk │ │ ├── sphere5K.msh │ │ ├── spheres.obj │ │ ├── spheres_gen.py │ │ └── tet.vtk │ ├── reader.py │ └── run.sh ├── NeuralPD │ ├── FEM.py │ ├── PD.py │ └── reader.py ├── Origami │ ├── StaticShell.py │ ├── TrajectoryOpt.py │ ├── activate │ ├── angle.py │ ├── diff_test.py │ ├── dihedral_angle.py │ ├── input │ │ ├── crane.fold │ │ ├── debug.fold │ │ ├── flappingBird.fold │ │ ├── flappingBird_10.fold │ │ ├── huffmanWaterbomb.fold │ │ ├── original.svg │ │ ├── simple_fold.fold │ │ ├── simple_fold_59.fold │ │ ├── traj.mat │ │ ├── version1.svg │ │ ├── version2.svg │ │ ├── wing2.fold │ │ ├── wing_clean.fold │ │ ├── wing_clean_poly.fold │ │ ├── wing_cp.fold │ │ └── wing_tips.mat │ ├── logger.py │ ├── membrane_hessianXx_test.py │ ├── reader.py │ ├── simplex_volume.py │ ├── timer.py │ └── trajectory_icp.py ├── PenaltyFluid │ ├── B2B1.py │ └── JBased.py ├── RPP │ └── SINKHORN.py ├── Standard │ ├── FEM_ADMM.py │ └── FEM_NEWTON.py ├── Water │ └── Q1Q0.py ├── brittle │ ├── DFGMPMSolver.py │ ├── DFGMPMSolverWithPredefinedFields.py │ ├── DFGMPMSolver_Old.py │ ├── Data │ │ └── OBJs │ │ │ ├── sharky.obj │ │ │ └── square2D.obj │ ├── README.md │ ├── examples │ │ ├── balls2D.py │ │ ├── bulletShoot2D.py │ │ ├── circleCrusher.py │ │ ├── circleExplode.py │ │ ├── circleFreefall.py │ │ ├── controlCenter2D.py │ │ ├── dirichletBulletShoot2D.py │ │ ├── hangingBlock2D.py │ │ ├── mode1Fracture2D.py │ │ ├── ringDrop2D.py │ │ ├── simpleCircleCrusher.py │ │ ├── simpleRingDrop2D.py │ │ ├── singlePointFreefall.py │ │ ├── singlePointFreefall3D.py │ │ ├── slidingBlocks.py │ │ ├── slipperySlope.py │ │ ├── test3D.py │ │ └── wabisabi.py │ ├── referenceCode │ │ ├── DFG-MPM.py │ │ ├── explicitMPM.py │ │ ├── mlsMPM.py │ │ ├── testBarrierDerivatives.py │ │ ├── testingBackGrid.py │ │ ├── testingFCR_Symmetry.py │ │ ├── testingGround.py │ │ └── weibull.py │ └── utils │ │ ├── eigenDecomposition.py │ │ └── sparse_matrix_DFG.py ├── melting │ ├── depth_real_30.txt │ ├── depth_real_40.txt │ ├── heatsolver.py │ ├── width_real_30.txt │ └── width_real_40.txt └── mpm │ ├── README.MD │ ├── basic │ ├── fixed_corotated.py │ ├── math_tools.py │ └── sparse_matrix.py │ ├── engine │ └── mpm_solver_implicit.py │ └── examples │ ├── test2d.py │ └── test3d.py └── tests └── TEST.py /.gitignore: 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