├── README.md ├── data ├── calc_stats_window_data.py └── vcf2eigenstrat.py ├── msmodified ├── Makefile ├── Makefile~ ├── clms ├── col1 ├── dist3.c ├── eca_funcsHOTmulti.h ├── er ├── microsat.c ├── migmat ├── ms ├── ms.c ├── ms.dSYM │ └── Contents │ │ ├── Info.plist │ │ └── Resources │ │ └── DWARF │ │ └── ms ├── ms.diff ├── ms.h ├── msGCHOT.c ├── msdoc.pdf ├── params ├── rand1.c ├── rand1t.c ├── rand2.c ├── rand2t.c ├── readme ├── readms.output.R ├── sample_stats.c ├── seedms ├── stats.c ├── streec.c ├── streec.diff ├── streecGCHOT.c └── tajd.c ├── simulations ├── README ├── calc_stats_ms.py ├── create_test.sh ├── create_training.sh └── ms.sh └── train └── train.R /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/sriramlab/ArchIE/HEAD/README.md -------------------------------------------------------------------------------- /data/calc_stats_window_data.py: 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