├── .Rbuildignore ├── .github ├── .gitignore └── workflows │ ├── docker-publish.yml │ └── pkgdown.yaml ├── .travis.yml ├── DESCRIPTION ├── Dockerfile ├── LICENSE ├── NAMESPACE ├── NEWS ├── R ├── plotlib.R ├── rrvgo.R └── shiny_rrvgo.R ├── README.md ├── _pkgdown.yml ├── docs ├── .nojekyll ├── 404.html ├── LICENSE-text.html ├── articles │ ├── figures │ │ ├── shiny_app.png │ │ └── treemap.png │ ├── index.html │ ├── rrvgo.html │ └── rrvgo_files │ │ └── figure-html │ │ ├── unnamed-chunk-3-1.png │ │ ├── unnamed-chunk-4-1.png │ │ └── unnamed-chunk-6-1.png ├── authors.html ├── bootstrap-toc.css ├── bootstrap-toc.js ├── docsearch.css ├── docsearch.js ├── index.html ├── link.svg ├── pkgdown.css ├── pkgdown.js ├── pkgdown.yml ├── reference │ ├── Rplot001.png │ ├── calculateSimMatrix.html │ ├── getGoSize.html │ ├── getGoTerm.html │ ├── getTermDisp.html │ ├── getTermUniq.html │ ├── gg_color_hue.html │ ├── heatmapPlot-1.png │ ├── heatmapPlot.html │ ├── index.html │ ├── loadOrgdb.html │ ├── reduceSimMatrix.html │ ├── scatterPlot-1.png │ ├── scatterPlot.html │ ├── shiny_rrvgo.html │ ├── treemapPlot.html │ ├── wordcloudPlot-1.png │ └── wordcloudPlot.html └── sitemap.xml ├── inst ├── CITATION ├── extdata │ ├── example.txt │ ├── example1.txt │ ├── example2.txt │ └── example3.txt ├── scripts │ └── data.R └── shiny_rrvgo │ └── app.R ├── man ├── calculateSimMatrix.Rd ├── getGoSize.Rd ├── getGoTerm.Rd ├── getTermDisp.Rd ├── getTermUniq.Rd ├── gg_color_hue.Rd ├── heatmapPlot.Rd ├── loadOrgdb.Rd ├── reduceSimMatrix.Rd ├── scatterPlot.Rd ├── shiny_rrvgo.Rd ├── treemapPlot.Rd └── wordcloudPlot.Rd ├── tests ├── testthat.R └── testthat │ ├── test-calculateSimMatrix.R │ └── test-reduceSimMatrix.R └── vignettes ├── figures ├── shiny_app.png └── treemap.png └── rrvgo.Rmd /.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ssayols/rrvgo/HEAD/.Rbuildignore 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