├── .github └── workflows │ └── ci.yml ├── CMakeLists.txt ├── ChangeLog ├── LICENSE.twister ├── README.md ├── examples ├── GlucoseExample │ ├── DGI_three_regions.txt │ ├── MAGIC_FUSION_Results.txt.gz │ ├── magic_SARDINIA.tbl │ └── metal.txt └── OriginalExamples │ ├── DGI_three_regions.txt │ ├── MAGIC_FUSION_Results.txt.gz │ ├── README.txt │ ├── magic_SARDINIA.tbl │ └── metal.txt ├── libsrc ├── BasicHash.cpp ├── BasicHash.h ├── CMakeLists.txt ├── Constant.h ├── Error.cpp ├── Error.h ├── FortranFormat.cpp ├── FortranFormat.h ├── GenotypeLists.cpp ├── GenotypeLists.h ├── Hash.cpp ├── Hash.h ├── InputFile.cpp ├── InputFile.h ├── IntArray.cpp ├── IntArray.h ├── Kinship.cpp ├── Kinship.h ├── KinshipX.cpp ├── KinshipX.h ├── LongArray.cpp ├── LongArray.h ├── LongInt.h ├── MapFunction.cpp ├── MapFunction.h ├── MathCholesky.cpp ├── MathCholesky.h ├── MathConstant.h ├── MathDeriv.cpp ├── MathDeriv.h ├── MathFloatVector.cpp ├── MathFloatVector.h ├── MathGenMin.cpp ├── MathGenMin.h ├── MathGold.cpp ├── MathGold.h ├── MathMatrix.cpp ├── MathMatrix.h ├── MathNormal.cpp ├── MathNormal.h ├── MathSVD.cpp ├── MathSVD.h ├── MathStats.cpp ├── MathStats.h ├── MathVector.cpp ├── MathVector.h ├── MemoryInfo.cpp ├── MemoryInfo.h ├── MiniDeflate.cpp ├── MiniDeflate.h ├── Parameters.cpp ├── Parameters.h ├── Pedigree.cpp ├── Pedigree.h ├── PedigreeAlleleFreq.cpp ├── PedigreeAlleleFreq.h ├── PedigreeAlleles.h ├── PedigreeDescription.cpp ├── PedigreeDescription.h ├── PedigreeFamily.cpp ├── PedigreeFamily.h ├── PedigreeGlobals.cpp ├── PedigreeGlobals.h ├── PedigreeLoader.cpp ├── PedigreePerson.cpp ├── PedigreePerson.h ├── PedigreeTrim.cpp ├── PedigreeTwin.cpp ├── QuickIndex.cpp ├── QuickIndex.h ├── Random.cpp ├── Random.h ├── Sort.cpp ├── Sort.h ├── StringArray.cpp ├── StringArray.h ├── StringBasics.cpp ├── StringBasics.h ├── StringHash.cpp ├── StringHash.h ├── StringMap.cpp ├── StringMap.h ├── TraitTransformations.cpp └── TraitTransformations.h ├── metal ├── CMakeLists.txt ├── Main.cpp └── Main.h ├── pdf ├── PDF.cpp ├── PDF.h ├── PDFfont.cpp ├── PDFfont.h ├── PDFinfo.cpp ├── PDFinfo.h ├── PDFpage.cpp └── PDFpage.h ├── tests ├── CMakeLists.txt ├── Data │ ├── DGI_three_regions.txt │ ├── MAGIC_FUSION_Results.txt.gz │ └── magic_SARDINIA.tbl ├── compare.cmake ├── compare_columns.cmake ├── metaltest.cpp ├── test_01 │ ├── METAANALYSIS1.TBL │ └── metal.txt ├── test_02 │ └── metal.txt ├── test_03 │ ├── METAANALYSIS1.TBL │ └── metal.txt ├── test_04 │ ├── METAANALYSIS1.TBL │ └── metal.txt ├── test_05 │ ├── METAANALYSIS1.TBL │ └── metal.txt ├── test_06 │ ├── METAANALYSIS1.TBL │ └── metal.txt ├── test_07 │ ├── METAANALYSIS1.TBL │ └── metal.txt ├── test_08 │ ├── METAANALYSIS1.TBL │ └── metal.txt ├── test_09 │ ├── METAANALYSIS1.TBL │ └── metal.txt └── test_10 │ ├── METAANALYSIS1.TBL │ └── metal.txt └── version └── VersionInfo.h /.github/workflows/ci.yml: -------------------------------------------------------------------------------- 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