├── .github └── workflows │ ├── auto_release.yml │ └── publish_release.yml ├── .gitignore ├── CHANGELOG ├── LICENSE ├── MANIFEST.in ├── README.md ├── admin ├── release_checklist.txt ├── triqler_logo.png └── triqler_logo.svg ├── example ├── dia_example │ ├── LFQBench_PS.csv │ ├── LFQBench_PS.csv.pqr.tsv │ ├── info.txt │ ├── log.txt │ ├── proteins.tsv │ └── run.sh ├── iPRG2016.tsv ├── iPRG2016_ref.proteins.1vs2.tsv ├── iPRG2016_ref.proteins.1vs3.tsv ├── iPRG2016_ref.proteins.2vs3.tsv └── iPRG2016_ref.tsv.pqr.tsv ├── poetry.lock ├── pyproject.toml ├── run_test.bat ├── run_test.sh ├── run_triqler.py ├── tests ├── system_tests │ └── compare_tables.py └── unit_tests │ ├── convert │ └── test_percolator.py │ └── test_pgm.py └── triqler ├── __init__.py ├── __main__.py ├── convert ├── __init__.py ├── diann.py ├── dinosaur.py ├── helpers.py ├── maxquant.py ├── normalize_intensities.py ├── percolator.py └── quandenser.py ├── convolution_dp.py ├── diff_exp.py ├── distribution ├── __init__.py ├── 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