├── .circleci └── config.yml ├── .coveragerc ├── .github └── workflows │ ├── circleci-artifact-redirector.yml │ ├── coverage.yml │ └── test.yml ├── .gitignore ├── CONTRIBUTE.rst ├── LICENSE ├── Makefile ├── README.rst ├── RELEASE.txt ├── TODO.txt ├── doc ├── Makefile ├── README.md ├── release │ ├── contribs.py │ ├── release_0.1.a2.txt │ ├── release_0.1.a3.txt │ ├── release_0.1.a4.txt │ ├── release_0.1.a5.txt │ ├── release_0.2.txt │ ├── release_dev.txt │ └── release_template.txt └── source │ ├── _static │ └── copybutton.js │ ├── api │ ├── core.rst │ ├── data.rst │ ├── index.rst │ ├── irr.rst │ ├── npc.rst │ ├── qa.rst │ ├── stratified.rst │ └── utils.rst │ ├── conf.py │ ├── dev │ ├── contribute.rst │ ├── gitwash │ │ ├── branch_dropdown.png │ │ ├── configure_git.rst │ │ ├── development_workflow.rst │ │ ├── following_latest.rst │ │ ├── forking_button.png │ │ ├── forking_hell.rst │ │ ├── git_development.rst │ │ ├── git_install.rst │ │ ├── git_intro.rst │ │ ├── git_links.inc │ │ ├── git_resources.rst │ │ ├── index.rst │ │ ├── known_projects.inc │ │ ├── links.inc │ │ ├── maintainer_workflow.rst │ │ ├── patching.rst │ │ ├── pull_button.png │ │ ├── set_up_fork.rst │ │ └── this_project.inc │ └── index.rst │ ├── index.rst │ ├── permute.bib │ └── user │ ├── index.rst │ ├── npc │ ├── chap1-4.rst │ ├── index.rst │ ├── kenya.rst │ └── westfall-wolfinger.rst │ ├── one-sample.rst │ ├── references.rst │ ├── regression.rst │ └── two-sample.rst ├── permute ├── __init__.py ├── conftest.py ├── core.py ├── data │ ├── MacNell2014.csv │ ├── __init__.py │ ├── npc │ │ ├── README.md │ │ ├── autofluorescence │ │ │ ├── autofl.csv │ │ │ ├── drusen.csv │ │ │ ├── micro.csv │ │ │ ├── oct.csv │ │ │ └── pigment.csv │ │ ├── botulinum.csv │ │ ├── chrom17m.csv │ │ ├── confocal.csv │ │ ├── examples_chapters_1-4 │ │ │ ├── fly.csv │ │ │ ├── ipat.csv │ │ │ ├── job.csv │ │ │ ├── testosterone.csv │ │ │ └── worms.csv │ │ ├── germina.csv │ │ ├── kenya.csv │ │ ├── massaro_blair.csv │ │ ├── monachus.csv │ │ ├── mult.csv │ │ ├── perch.csv │ │ ├── rats.csv │ │ ├── setig.csv │ │ ├── survival │ │ │ ├── three_sample.csv │ │ │ ├── three_sample_strata.csv │ │ │ ├── two_sample_surv.csv │ │ │ └── two_sample_surv_strata.csv │ │ ├── urology.csv │ │ ├── washing_test.csv │ │ └── waterfalls.csv │ ├── nsgk.csv │ ├── nsgk_data_clean.txt │ ├── rb_clinical_trial.csv │ └── tests │ │ ├── __init__.py │ │ ├── test_data.py │ │ ├── test_macnell.py │ │ └── test_nsgk.py ├── irr.py ├── ksample.py ├── npc.py ├── qa.py ├── sprt.py ├── stratified.py ├── tests │ ├── __init__.py │ ├── test_SPRT.py │ ├── test_core.py │ ├── test_importing.py │ ├── test_irr.py │ ├── test_ksample.py │ ├── test_npc.py │ ├── test_qa.py │ ├── test_stratified.py │ └── test_utils.py └── utils.py ├── requirements.txt ├── requirements ├── README.md ├── default.txt ├── doc.txt ├── release.txt └── test.txt └── setup.py /.circleci/config.yml: -------------------------------------------------------------------------------- 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